miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18313 5' -54.6 NC_004681.1 + 2496 0.72 0.452725
Target:  5'- cUUGCGGGUguacUGGCCuuUGGuGUgGACCa -3'
miRNA:   3'- cAACGUCCG----ACCGGu-ACCuCAaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 68417 0.72 0.442961
Target:  5'- --cGCAGGCUGGCguuCGUGGAauacaaGUgaacGACCg -3'
miRNA:   3'- caaCGUCCGACCG---GUACCU------CAa---CUGG- -5'
18313 5' -54.6 NC_004681.1 + 29410 0.72 0.433318
Target:  5'- cGUUGaggAGGUUGGUgcgaGUGGAGUUGACg -3'
miRNA:   3'- -CAACg--UCCGACCGg---UACCUCAACUGg -5'
18313 5' -54.6 NC_004681.1 + 40001 0.75 0.297225
Target:  5'- --cGCAGGCUGGCCGcgcgcUGGGGgucuCCg -3'
miRNA:   3'- caaCGUCCGACCGGU-----ACCUCaacuGG- -5'
18313 5' -54.6 NC_004681.1 + 28637 0.77 0.251582
Target:  5'- -cUGCGGGCUugaugaacugguuuGCCGUGGAGaUGACCg -3'
miRNA:   3'- caACGUCCGAc-------------CGGUACCUCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 33462 0.78 0.19154
Target:  5'- cGUUGCGGGCcagUGGCCGUGGcugauccuGG-UGGCCg -3'
miRNA:   3'- -CAACGUCCG---ACCGGUACC--------UCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 39017 0.98 0.009287
Target:  5'- gGUUGCAGGCU-GCCAUGGAGUUGACCc -3'
miRNA:   3'- -CAACGUCCGAcCGGUACCUCAACUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.