miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18313 5' -54.6 NC_004681.1 + 29410 0.72 0.433318
Target:  5'- cGUUGaggAGGUUGGUgcgaGUGGAGUUGACg -3'
miRNA:   3'- -CAACg--UCCGACCGg---UACCUCAACUGg -5'
18313 5' -54.6 NC_004681.1 + 68417 0.72 0.442961
Target:  5'- --cGCAGGCUGGCguuCGUGGAauacaaGUgaacGACCg -3'
miRNA:   3'- caaCGUCCGACCG---GUACCU------CAa---CUGG- -5'
18313 5' -54.6 NC_004681.1 + 2496 0.72 0.452725
Target:  5'- cUUGCGGGUguacUGGCCuuUGGuGUgGACCa -3'
miRNA:   3'- cAACGUCCG----ACCGGu-ACCuCAaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 21343 0.72 0.462604
Target:  5'- ---aCAGGCUGGCCGUGaGAuGcaGACCg -3'
miRNA:   3'- caacGUCCGACCGGUAC-CU-CaaCUGG- -5'
18313 5' -54.6 NC_004681.1 + 6360 0.71 0.534631
Target:  5'- cGUU-CGGGgUGGCgAcaccGGAGUUGACCa -3'
miRNA:   3'- -CAAcGUCCgACCGgUa---CCUCAACUGG- -5'
18313 5' -54.6 NC_004681.1 + 16500 0.7 0.555967
Target:  5'- --cGCAuGGcCUGGUCAcccuUGGAGgUGGCCg -3'
miRNA:   3'- caaCGU-CC-GACCGGU----ACCUCaACUGG- -5'
18313 5' -54.6 NC_004681.1 + 62600 0.66 0.818951
Target:  5'- -gUGCccauGGCcugGGCCAUgaucaGGAGUUcguaGACCa -3'
miRNA:   3'- caACGu---CCGa--CCGGUA-----CCUCAA----CUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.