miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18314 3' -55.2 NC_004681.1 + 8405 0.68 0.714209
Target:  5'- -gAUGUCGuuGUccagGCCguccUUGGCGGCGu -3'
miRNA:   3'- agUACAGCggCAaa--CGG----AGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 27921 0.68 0.714209
Target:  5'- -----aCGCgGg--GCCUCGGCGGCa -3'
miRNA:   3'- aguacaGCGgCaaaCGGAGCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 51276 0.68 0.714209
Target:  5'- gCAUGgCGCCGaggacUGCugaCUCGGCGGCu -3'
miRNA:   3'- aGUACaGCGGCaa---ACG---GAGCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 11990 0.68 0.714209
Target:  5'- aCAUGaccucuUCGUCGU---CCUCGGUGACGu -3'
miRNA:   3'- aGUAC------AGCGGCAaacGGAGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 15759 0.68 0.689014
Target:  5'- ---cGUCGCCGUUggcgucugcgugaGCCUCGcGCG-CGg -3'
miRNA:   3'- aguaCAGCGGCAAa------------CGGAGC-CGCuGC- -5'
18314 3' -55.2 NC_004681.1 + 6678 0.69 0.649638
Target:  5'- cCAUGgCGCCcUUgacggcgcgcaggUGCUUCGGUGACGa -3'
miRNA:   3'- aGUACaGCGGcAA-------------ACGGAGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 5161 0.69 0.633587
Target:  5'- aCA--UCGCCGaauuccagguugGCCUUGGCGACGu -3'
miRNA:   3'- aGUacAGCGGCaaa---------CGGAGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 47476 0.69 0.629305
Target:  5'- ---cGUCGCCGUggcGCgUUGGCgGGCGa -3'
miRNA:   3'- aguaCAGCGGCAaa-CGgAGCCG-CUGC- -5'
18314 3' -55.2 NC_004681.1 + 61270 0.71 0.513514
Target:  5'- ---cGUCGCCGUcgacccagUUGCCcugggcgucgCGGCGGCGu -3'
miRNA:   3'- aguaCAGCGGCA--------AACGGa---------GCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 40671 1.08 0.001847
Target:  5'- cUCAUGUCGCCGUUUGCCUCGGCGACGc -3'
miRNA:   3'- -AGUACAGCGGCAAACGGAGCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.