miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 3' -54.4 NC_004681.1 + 47472 0.66 0.818907
Target:  5'- aGGUCGCCGcgugcgaCGGCCACuacaagucgcuGCUCuacACCUa -3'
miRNA:   3'- -UCAGCGGUaa-----GUCGGUG-----------CGAGu--UGGG- -5'
18315 3' -54.4 NC_004681.1 + 10938 0.66 0.818907
Target:  5'- aGGUCGCaaucgCGGCgGCGaugUCAGCCUu -3'
miRNA:   3'- -UCAGCGguaa-GUCGgUGCg--AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 67051 0.66 0.809679
Target:  5'- uGUCGCC-UUCgAGCUcgGCGCgCGGCaCCa -3'
miRNA:   3'- uCAGCGGuAAG-UCGG--UGCGaGUUG-GG- -5'
18315 3' -54.4 NC_004681.1 + 70565 0.67 0.804055
Target:  5'- uAGUCGCuCAUcuauccuccgauuacUCuGCagaGCGCUCAGCgCa -3'
miRNA:   3'- -UCAGCG-GUA---------------AGuCGg--UGCGAGUUGgG- -5'
18315 3' -54.4 NC_004681.1 + 52338 0.67 0.80027
Target:  5'- gAGUCGCCAc-CGGCCAgGUuggUCAGgUCg -3'
miRNA:   3'- -UCAGCGGUaaGUCGGUgCG---AGUUgGG- -5'
18315 3' -54.4 NC_004681.1 + 28759 0.67 0.80027
Target:  5'- uGUCGCCAUggaguucgUGGCC-CaGCUCAAUCa -3'
miRNA:   3'- uCAGCGGUAa-------GUCGGuG-CGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 14345 0.67 0.80027
Target:  5'- --gCGCgGUucUCAGCC-CGCgUCAGCUCa -3'
miRNA:   3'- ucaGCGgUA--AGUCGGuGCG-AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 2774 0.67 0.79069
Target:  5'- cAGUCGCgc--CAGUgACGCUCGgagacguaggagACCCg -3'
miRNA:   3'- -UCAGCGguaaGUCGgUGCGAGU------------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 17593 0.67 0.780949
Target:  5'- aAG-CGCCGUgguaucggcggcUCGGgCGCGgaCGACCCc -3'
miRNA:   3'- -UCaGCGGUA------------AGUCgGUGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 23272 0.67 0.780949
Target:  5'- uGG-CGUCGUUCAG--ACGCUCAuccaGCCCc -3'
miRNA:   3'- -UCaGCGGUAAGUCggUGCGAGU----UGGG- -5'
18315 3' -54.4 NC_004681.1 + 1406 0.67 0.771058
Target:  5'- uGUCGgCGaggucgUCGGCCA-GCUCGuCCCa -3'
miRNA:   3'- uCAGCgGUa-----AGUCGGUgCGAGUuGGG- -5'
18315 3' -54.4 NC_004681.1 + 68867 0.67 0.771058
Target:  5'- uGGUCGaCCGUcaucuaacuccuUCGGCCugGCgu-GCCa -3'
miRNA:   3'- -UCAGC-GGUA------------AGUCGGugCGaguUGGg -5'
18315 3' -54.4 NC_004681.1 + 33038 0.67 0.771058
Target:  5'- cGcCGCCGaugaaguccUUCAGCgAUGCcgcagCGACCCg -3'
miRNA:   3'- uCaGCGGU---------AAGUCGgUGCGa----GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 59177 0.67 0.761028
Target:  5'- cGUCGCCAccuauGUCACGgaCGGCCUc -3'
miRNA:   3'- uCAGCGGUaagu-CGGUGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 19713 0.67 0.761028
Target:  5'- -cUCGCCGUcaUCGaCCACGCcgCAgcgcGCCCa -3'
miRNA:   3'- ucAGCGGUA--AGUcGGUGCGa-GU----UGGG- -5'
18315 3' -54.4 NC_004681.1 + 42428 0.67 0.761028
Target:  5'- cGUCGgCGcgCAGCC-UGCaCGACCCg -3'
miRNA:   3'- uCAGCgGUaaGUCGGuGCGaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 5812 0.67 0.761028
Target:  5'- --aCuCCAUgagcgacaGGCCGCGCUcCAGCCCg -3'
miRNA:   3'- ucaGcGGUAag------UCGGUGCGA-GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 24826 0.67 0.761028
Target:  5'- cGUUGCCGgugUCGacuGCgAUGC-CGACCCa -3'
miRNA:   3'- uCAGCGGUa--AGU---CGgUGCGaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 46080 0.67 0.760017
Target:  5'- aAGUCgGCCGcgaAGCCGCGCUCcucaacaAGCgCCu -3'
miRNA:   3'- -UCAG-CGGUaagUCGGUGCGAG-------UUG-GG- -5'
18315 3' -54.4 NC_004681.1 + 31328 0.68 0.750868
Target:  5'- cGG-CGCCGguccccCAGCCACGCUgCGAugUCCu -3'
miRNA:   3'- -UCaGCGGUaa----GUCGGUGCGA-GUU--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.