miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 5' -53 NC_004681.1 + 69007 0.66 0.920443
Target:  5'- gCGGcGGCCGUGAcgaUGGucagcgccuCGAUGGCGuCg -3'
miRNA:   3'- -GCC-CUGGCACU---ACCu--------GUUACUGCuGa -5'
18315 5' -53 NC_004681.1 + 72415 0.66 0.914374
Target:  5'- --uGACCGUGucacauggugGGACGAcGACGACg -3'
miRNA:   3'- gccCUGGCACua--------CCUGUUaCUGCUGa -5'
18315 5' -53 NC_004681.1 + 65152 0.66 0.908038
Target:  5'- gGGGAUCGUGGaguacgggaccuUGG-CAGUGccuACGGCg -3'
miRNA:   3'- gCCCUGGCACU------------ACCuGUUAC---UGCUGa -5'
18315 5' -53 NC_004681.1 + 7581 0.66 0.894577
Target:  5'- cCGGGgagGCCGUGAUGGcaccuACGcccGCGACUu -3'
miRNA:   3'- -GCCC---UGGCACUACC-----UGUuacUGCUGA- -5'
18315 5' -53 NC_004681.1 + 34538 0.66 0.894577
Target:  5'- uCGGGcGCCGcGGUGGcgcgcuucuuCGGUGugGACUu -3'
miRNA:   3'- -GCCC-UGGCaCUACCu---------GUUACugCUGA- -5'
18315 5' -53 NC_004681.1 + 29291 0.66 0.887458
Target:  5'- aGGGGuuaCGUGAgagGGAUuGUGAUGGCc -3'
miRNA:   3'- gCCCUg--GCACUa--CCUGuUACUGCUGa -5'
18315 5' -53 NC_004681.1 + 55626 0.67 0.880087
Target:  5'- -aGGGCCuUGAUGGuu-AUGGCGGCg -3'
miRNA:   3'- gcCCUGGcACUACCuguUACUGCUGa -5'
18315 5' -53 NC_004681.1 + 69276 0.67 0.880087
Target:  5'- -uGGGCCGaucUGAUGGACcgcGugGACg -3'
miRNA:   3'- gcCCUGGC---ACUACCUGuuaCugCUGa -5'
18315 5' -53 NC_004681.1 + 1794 0.67 0.872467
Target:  5'- aGGGACgGcuacagGAUGGugAggGACuGACUg -3'
miRNA:   3'- gCCCUGgCa-----CUACCugUuaCUG-CUGA- -5'
18315 5' -53 NC_004681.1 + 66674 0.67 0.856511
Target:  5'- aGGGGCCG-GGUGGugGAaaucuACGGCc -3'
miRNA:   3'- gCCCUGGCaCUACCugUUac---UGCUGa -5'
18315 5' -53 NC_004681.1 + 6814 0.67 0.856511
Target:  5'- ----cCCGUcGAUGGACcGUGACGGCg -3'
miRNA:   3'- gcccuGGCA-CUACCUGuUACUGCUGa -5'
18315 5' -53 NC_004681.1 + 22914 0.67 0.848187
Target:  5'- uGGuGGCCGUucaGGUGGAacccguUGGCGACa -3'
miRNA:   3'- gCC-CUGGCA---CUACCUguu---ACUGCUGa -5'
18315 5' -53 NC_004681.1 + 12413 0.67 0.848187
Target:  5'- uCGGuGAgCCgGUGAcGGACGAgGACGGCg -3'
miRNA:   3'- -GCC-CU-GG-CACUaCCUGUUaCUGCUGa -5'
18315 5' -53 NC_004681.1 + 33083 0.67 0.848187
Target:  5'- uGGGAggaGUGGUGGAaCGAgGGCGACc -3'
miRNA:   3'- gCCCUgg-CACUACCU-GUUaCUGCUGa -5'
18315 5' -53 NC_004681.1 + 44592 0.68 0.839643
Target:  5'- aGGGaACCuUGGUGGGgGucucuaaugggGUGGCGACUg -3'
miRNA:   3'- gCCC-UGGcACUACCUgU-----------UACUGCUGA- -5'
18315 5' -53 NC_004681.1 + 27679 0.68 0.839643
Target:  5'- gCGGcGGCgGUGGUGGugG-UGGCGcCUa -3'
miRNA:   3'- -GCC-CUGgCACUACCugUuACUGCuGA- -5'
18315 5' -53 NC_004681.1 + 50090 0.69 0.784257
Target:  5'- gCGGGAUgGUGGUcuccaGGGUGAUGACGAUg -3'
miRNA:   3'- -GCCCUGgCACUA-----CCUGUUACUGCUGa -5'
18315 5' -53 NC_004681.1 + 71500 0.69 0.754358
Target:  5'- uGGGACCGUGGUuugGGugAGcUGGgaGACUa -3'
miRNA:   3'- gCCCUGGCACUA---CCugUU-ACUg-CUGA- -5'
18315 5' -53 NC_004681.1 + 30778 0.7 0.744135
Target:  5'- -aGGGCCGUGAUGGAa---GGCGAg- -3'
miRNA:   3'- gcCCUGGCACUACCUguuaCUGCUga -5'
18315 5' -53 NC_004681.1 + 3157 0.7 0.702252
Target:  5'- -aGGGCC-UGAUGGACAcUGACGGg- -3'
miRNA:   3'- gcCCUGGcACUACCUGUuACUGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.