miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18316 3' -61.1 NC_004681.1 + 18391 0.66 0.518949
Target:  5'- aGGCGGcgGCcgCGGCGgcaaaCgCCUUCg -3'
miRNA:   3'- gCCGCCuaCGaaGCCGCa----GgGGGAGa -5'
18316 3' -61.1 NC_004681.1 + 62522 0.66 0.48005
Target:  5'- gCGGCGGAgaggGCggugUCGGCG-CCCagCCa-- -3'
miRNA:   3'- -GCCGCCUa---CGa---AGCCGCaGGG--GGaga -5'
18316 3' -61.1 NC_004681.1 + 24845 0.66 0.48005
Target:  5'- uCGGCGGc-GCgggCGGCGgccgccaaggCUCCCUCa -3'
miRNA:   3'- -GCCGCCuaCGaa-GCCGCa---------GGGGGAGa -5'
18316 3' -61.1 NC_004681.1 + 47818 0.67 0.433533
Target:  5'- uGGUGGAUGCUcgUCaccGCGUgCCCCg-- -3'
miRNA:   3'- gCCGCCUACGA--AGc--CGCAgGGGGaga -5'
18316 3' -61.1 NC_004681.1 + 6664 0.68 0.415672
Target:  5'- aCGGCGcgcaGGUGCUUCGGUGacgaCUCCUUg -3'
miRNA:   3'- -GCCGC----CUACGAAGCCGCag--GGGGAGa -5'
18316 3' -61.1 NC_004681.1 + 32288 0.68 0.415672
Target:  5'- gGGUGGA-GCUcaaCGGCGaCCCCCa-- -3'
miRNA:   3'- gCCGCCUaCGAa--GCCGCaGGGGGaga -5'
18316 3' -61.1 NC_004681.1 + 994 0.68 0.373058
Target:  5'- aGGCGGAcGCcagggCGGCuUCCCgCUCUc -3'
miRNA:   3'- gCCGCCUaCGaa---GCCGcAGGGgGAGA- -5'
18316 3' -61.1 NC_004681.1 + 31674 0.71 0.245445
Target:  5'- cCGGCugGGGUGCUUCuGCGUCUgCUCUCg -3'
miRNA:   3'- -GCCG--CCUACGAAGcCGCAGG-GGGAGa -5'
18316 3' -61.1 NC_004681.1 + 14564 0.74 0.173098
Target:  5'- uCGGCGGAggcgGCgcgcgCGGCGUUCgCCUCc -3'
miRNA:   3'- -GCCGCCUa---CGaa---GCCGCAGGgGGAGa -5'
18316 3' -61.1 NC_004681.1 + 16143 0.74 0.168734
Target:  5'- gCGGCGGAUGCggugacagCGGCGgCgCCCUUg -3'
miRNA:   3'- -GCCGCCUACGaa------GCCGCaGgGGGAGa -5'
18316 3' -61.1 NC_004681.1 + 32958 0.74 0.160301
Target:  5'- gCGGCGGGUGCUUCGGCaa-CCCgUa- -3'
miRNA:   3'- -GCCGCCUACGAAGCCGcagGGGgAga -5'
18316 3' -61.1 NC_004681.1 + 6504 0.75 0.130254
Target:  5'- uGGCcGGUcGCUUCGGCGccggggccuccUCCCCCUCg -3'
miRNA:   3'- gCCGcCUA-CGAAGCCGC-----------AGGGGGAGa -5'
18316 3' -61.1 NC_004681.1 + 45155 1.08 0.000567
Target:  5'- gCGGCGGAUGCUUCGGCGUCCCCCUCUa -3'
miRNA:   3'- -GCCGCCUACGAAGCCGCAGGGGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.