miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18318 3' -54.8 NC_004681.1 + 6766 0.67 0.698288
Target:  5'- ---aGCUGCACGGCGagcaaGAuGUCCuccaGGUCg -3'
miRNA:   3'- aagaCGACGUGCCGUg----CU-UAGG----UCAG- -5'
18318 3' -54.8 NC_004681.1 + 23934 0.68 0.665496
Target:  5'- ---cGCUGCGCGGCGcCGGAUCgGcGUg -3'
miRNA:   3'- aagaCGACGUGCCGU-GCUUAGgU-CAg -5'
18318 3' -54.8 NC_004681.1 + 66112 0.68 0.665496
Target:  5'- -cCUGCUGCACuGCACGAAgugcaaCGGa- -3'
miRNA:   3'- aaGACGACGUGcCGUGCUUag----GUCag -5'
18318 3' -54.8 NC_004681.1 + 254 0.69 0.581784
Target:  5'- gUCUGUUGCAUGGCAuaUGGAUgugugcaggucagagCCAGUUu -3'
miRNA:   3'- aAGACGACGUGCCGU--GCUUA---------------GGUCAG- -5'
18318 3' -54.8 NC_004681.1 + 60111 0.7 0.50249
Target:  5'- aUCgccugGCUGUACGGCAgCGggUUCcccaAGUCg -3'
miRNA:   3'- aAGa----CGACGUGCCGU-GCuuAGG----UCAG- -5'
18318 3' -54.8 NC_004681.1 + 56463 0.71 0.481838
Target:  5'- ---aGCUGCACGGCAC--AUCCAuUCg -3'
miRNA:   3'- aagaCGACGUGCCGUGcuUAGGUcAG- -5'
18318 3' -54.8 NC_004681.1 + 73269 0.72 0.432124
Target:  5'- ---aGgUGCGCGGCugGAGUgCCAGUa -3'
miRNA:   3'- aagaCgACGUGCCGugCUUA-GGUCAg -5'
18318 3' -54.8 NC_004681.1 + 13002 0.72 0.413092
Target:  5'- ---gGCUGguCGGCACGAAgCCGGUg -3'
miRNA:   3'- aagaCGACguGCCGUGCUUaGGUCAg -5'
18318 3' -54.8 NC_004681.1 + 46767 0.73 0.376624
Target:  5'- ---cGCUGCGCGcGCACGGcGUCaCGGUCa -3'
miRNA:   3'- aagaCGACGUGC-CGUGCU-UAG-GUCAG- -5'
18318 3' -54.8 NC_004681.1 + 57894 0.73 0.359222
Target:  5'- cUCgGCgGCGCGGCGCGuGGUCgCGGUCu -3'
miRNA:   3'- aAGaCGaCGUGCCGUGC-UUAG-GUCAG- -5'
18318 3' -54.8 NC_004681.1 + 46599 1.08 0.001485
Target:  5'- gUUCUGCUGCACGGCACGAAUCCAGUCg -3'
miRNA:   3'- -AAGACGACGUGCCGUGCUUAGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.