miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18318 5' -59.8 NC_004681.1 + 2111 0.66 0.590552
Target:  5'- -cGACCaCCuGGCCGcggccggauGGGUGCUGGGc -3'
miRNA:   3'- cuCUGGaGGuCCGGC---------UCCAUGGCCUc -5'
18318 5' -59.8 NC_004681.1 + 478 0.66 0.590552
Target:  5'- gGAGGCg-CCuGGCCGAGaUGCUGGGc -3'
miRNA:   3'- -CUCUGgaGGuCCGGCUCcAUGGCCUc -5'
18318 5' -59.8 NC_004681.1 + 46986 0.66 0.577085
Target:  5'- cGAGGCCcgaagacggugaacUCCacccggacaAGGCgguugaucauCGGGGUGCCGGGGc -3'
miRNA:   3'- -CUCUGG--------------AGG---------UCCG----------GCUCCAUGGCCUC- -5'
18318 5' -59.8 NC_004681.1 + 45472 0.66 0.569861
Target:  5'- aGGugCUCCcccGCCuugGAGGUGCgGGAGu -3'
miRNA:   3'- cUCugGAGGuc-CGG---CUCCAUGgCCUC- -5'
18318 5' -59.8 NC_004681.1 + 34260 0.66 0.569861
Target:  5'- cGGGGCCUucggcuuugUCGGGCacaucuaccCGGGGUGgCGGAGu -3'
miRNA:   3'- -CUCUGGA---------GGUCCG---------GCUCCAUgGCCUC- -5'
18318 5' -59.8 NC_004681.1 + 18198 0.66 0.568831
Target:  5'- gGAGcGCCUCCcGGCgcaccccCGGGuGUACCGGGc -3'
miRNA:   3'- -CUC-UGGAGGuCCG-------GCUC-CAUGGCCUc -5'
18318 5' -59.8 NC_004681.1 + 12078 0.66 0.559581
Target:  5'- cGAGGCCgaguaCguGGCCGAGGU-CCGc-- -3'
miRNA:   3'- -CUCUGGa----GguCCGGCUCCAuGGCcuc -5'
18318 5' -59.8 NC_004681.1 + 7445 0.66 0.548333
Target:  5'- gGAGGCUucgCCGcGGCgGcggggucagccccGGGUGCCGGGGg -3'
miRNA:   3'- -CUCUGGa--GGU-CCGgC-------------UCCAUGGCCUC- -5'
18318 5' -59.8 NC_004681.1 + 38818 0.66 0.543244
Target:  5'- cGAGACCaUCCGGGCCuacggcggcagcgugGAGGgcUACCuGAa -3'
miRNA:   3'- -CUCUGG-AGGUCCGG---------------CUCC--AUGGcCUc -5'
18318 5' -59.8 NC_004681.1 + 17962 0.67 0.488447
Target:  5'- gGAGGuCCUCCAGagugaacGCCGGGGcgcCCGGGu -3'
miRNA:   3'- -CUCU-GGAGGUC-------CGGCUCCau-GGCCUc -5'
18318 5' -59.8 NC_004681.1 + 19989 0.68 0.470116
Target:  5'- --aACCUCCAGGCCGGucaGU-CCGGGc -3'
miRNA:   3'- cucUGGAGGUCCGGCUc--CAuGGCCUc -5'
18318 5' -59.8 NC_004681.1 + 7902 0.68 0.46061
Target:  5'- --cGCCUCCGaggaagccGCCGAGGaGCCGGAa -3'
miRNA:   3'- cucUGGAGGUc-------CGGCUCCaUGGCCUc -5'
18318 5' -59.8 NC_004681.1 + 51318 0.68 0.423648
Target:  5'- uGAGaAUCUCCAugacGGCCGGGGUGgcguucUUGGAGa -3'
miRNA:   3'- -CUC-UGGAGGU----CCGGCUCCAU------GGCCUC- -5'
18318 5' -59.8 NC_004681.1 + 8229 0.69 0.394528
Target:  5'- aAGGCCcaCCAGGCCGAGGUcgaggcgcacgagcGCgcgcaGGAGa -3'
miRNA:   3'- cUCUGGa-GGUCCGGCUCCA--------------UGg----CCUC- -5'
18318 5' -59.8 NC_004681.1 + 5613 0.71 0.316785
Target:  5'- cGAGuacuACUUCCAGGCC--GGUGCCGGuGu -3'
miRNA:   3'- -CUC----UGGAGGUCCGGcuCCAUGGCCuC- -5'
18318 5' -59.8 NC_004681.1 + 18214 0.71 0.316047
Target:  5'- -uGACCcggugCCuGGCCGGGGgcgccgaUGCCGGGGa -3'
miRNA:   3'- cuCUGGa----GGuCCGGCUCC-------AUGGCCUC- -5'
18318 5' -59.8 NC_004681.1 + 22784 0.71 0.302264
Target:  5'- gGGGGCgccaCUCCuuGGGCUGGucGGUGCCGGGGa -3'
miRNA:   3'- -CUCUG----GAGG--UCCGGCU--CCAUGGCCUC- -5'
18318 5' -59.8 NC_004681.1 + 34773 0.71 0.295198
Target:  5'- cGAGACCccgaacaacUCCAGGCCauGAGGgACUGGGc -3'
miRNA:   3'- -CUCUGG---------AGGUCCGG--CUCCaUGGCCUc -5'
18318 5' -59.8 NC_004681.1 + 46560 1.07 0.000803
Target:  5'- gGAGACCUCCAGGCCGAGGUACCGGAGc -3'
miRNA:   3'- -CUCUGGAGGUCCGGCUCCAUGGCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.