miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18319 3' -61.8 NC_004681.1 + 32652 0.66 0.52982
Target:  5'- aCGGUG-GCGGGGaccugGGCCGacaUGugGuCCGg -3'
miRNA:   3'- -GCCGCgCGCCCUa----CUGGC---ACugC-GGC- -5'
18319 3' -61.8 NC_004681.1 + 19193 0.66 0.52982
Target:  5'- --uCGCGCcGGGUGuCCugggugGUGACGCCGg -3'
miRNA:   3'- gccGCGCGcCCUACuGG------CACUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 27298 0.66 0.52982
Target:  5'- gGGCGUccaucGCGGuGAacaucACCGUGGCGCaCGa -3'
miRNA:   3'- gCCGCG-----CGCC-CUac---UGGCACUGCG-GC- -5'
18319 3' -61.8 NC_004681.1 + 59721 0.66 0.520037
Target:  5'- uGGaCGUGCcGGAUGucgagcGCCcugGUGACGCCa -3'
miRNA:   3'- gCC-GCGCGcCCUAC------UGG---CACUGCGGc -5'
18319 3' -61.8 NC_004681.1 + 40445 0.66 0.519062
Target:  5'- uCGGCGCccuugagGCGGccGAUGACauUGAaCGCCGc -3'
miRNA:   3'- -GCCGCG-------CGCC--CUACUGgcACU-GCGGC- -5'
18319 3' -61.8 NC_004681.1 + 18236 0.66 0.510325
Target:  5'- gGGCGUG-GGGAacgGGCCGaccUGAC-CCGg -3'
miRNA:   3'- gCCGCGCgCCCUa--CUGGC---ACUGcGGC- -5'
18319 3' -61.8 NC_004681.1 + 62393 0.66 0.509358
Target:  5'- cCGGCGacaucCGGGuacuggcAUGGCUG-GGCGCCGa -3'
miRNA:   3'- -GCCGCgc---GCCC-------UACUGGCaCUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 5274 0.66 0.50069
Target:  5'- gGGCGCGgacaGGGucUGACCGUua-GCCa -3'
miRNA:   3'- gCCGCGCg---CCCu-ACUGGCAcugCGGc -5'
18319 3' -61.8 NC_004681.1 + 2955 0.66 0.50069
Target:  5'- aCGGUcgaGCGCcucgGGGAcggUGACCGUGuaGCGgCGg -3'
miRNA:   3'- -GCCG---CGCG----CCCU---ACUGGCAC--UGCgGC- -5'
18319 3' -61.8 NC_004681.1 + 7577 0.66 0.491136
Target:  5'- aCGGC-CG-GGGA-GGCCGUGAUGgCa -3'
miRNA:   3'- -GCCGcGCgCCCUaCUGGCACUGCgGc -5'
18319 3' -61.8 NC_004681.1 + 54129 0.66 0.472288
Target:  5'- gGGCGCGCGGcg-GACCcucGUGgaaGCCa -3'
miRNA:   3'- gCCGCGCGCCcuaCUGG---CACug-CGGc -5'
18319 3' -61.8 NC_004681.1 + 32230 0.67 0.463002
Target:  5'- uGGUcguugGCGUGGGccgccgcgGUGACCGcuuccugGAUGCCGg -3'
miRNA:   3'- gCCG-----CGCGCCC--------UACUGGCa------CUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 2434 0.67 0.453812
Target:  5'- uGGCGCGCGGcac-GCagaaGUgGGCGCCGa -3'
miRNA:   3'- gCCGCGCGCCcuacUGg---CA-CUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 23462 0.67 0.453812
Target:  5'- aGGCGgGCaGGAgguUGACCaccucgGGCGCCu -3'
miRNA:   3'- gCCGCgCGcCCU---ACUGGca----CUGCGGc -5'
18319 3' -61.8 NC_004681.1 + 9514 0.67 0.435736
Target:  5'- gCGGCGaGCGgucuGGAUGACCGaaGGCGCg- -3'
miRNA:   3'- -GCCGCgCGC----CCUACUGGCa-CUGCGgc -5'
18319 3' -61.8 NC_004681.1 + 18161 0.67 0.435736
Target:  5'- -cGCGgGCGGGAcaaucggaaGACCGcGGCGCUGc -3'
miRNA:   3'- gcCGCgCGCCCUa--------CUGGCaCUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 6383 0.67 0.426855
Target:  5'- uGGCGCugucgaGgGGGAggaGGCCccGGCGCCGa -3'
miRNA:   3'- gCCGCG------CgCCCUa--CUGGcaCUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 14662 0.67 0.426855
Target:  5'- aGGCGacuGCGGccguGGUGGCgGUGGCGgCGa -3'
miRNA:   3'- gCCGCg--CGCC----CUACUGgCACUGCgGC- -5'
18319 3' -61.8 NC_004681.1 + 34814 0.68 0.410282
Target:  5'- -aGCGCGCGGGAauucccaagcccgcACCGaaGGCGCCGa -3'
miRNA:   3'- gcCGCGCGCCCUac------------UGGCa-CUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 58753 0.68 0.400871
Target:  5'- uGGCcCGCGGcgcaGgcGGCCGUGGCGCa- -3'
miRNA:   3'- gCCGcGCGCC----CuaCUGGCACUGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.