Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18319 | 3' | -61.8 | NC_004681.1 | + | 46881 | 1.08 | 0.000521 |
Target: 5'- aCGGCGCGCGGGAUGACCGUGACGCCGu -3' miRNA: 3'- -GCCGCGCGCCCUACUGGCACUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 12297 | 0.8 | 0.060635 |
Target: 5'- gCGGCGCGCGGGGaaGCCc-GACGCCGg -3' miRNA: 3'- -GCCGCGCGCCCUacUGGcaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 50097 | 0.74 | 0.159806 |
Target: 5'- aCGGCGCGCGGGAUGGuggucuCCaggGUGAUGaCGa -3' miRNA: 3'- -GCCGCGCGCCCUACU------GG---CACUGCgGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 53755 | 0.73 | 0.195283 |
Target: 5'- cCGGCGCGCuuguGGAUGAcgacaCCGaccagGGCGCCGu -3' miRNA: 3'- -GCCGCGCGc---CCUACU-----GGCa----CUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 57885 | 0.73 | 0.181235 |
Target: 5'- gCGGCGCGUGGucgcggucuccGGUGGCgGUGuCGCCu -3' miRNA: 3'- -GCCGCGCGCC-----------CUACUGgCACuGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 15888 | 0.73 | 0.200173 |
Target: 5'- gCGGcCGCGUGGGuc-ACCGUGAagauCGCCGu -3' miRNA: 3'- -GCC-GCGCGCCCuacUGGCACU----GCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 44820 | 0.72 | 0.220811 |
Target: 5'- aGGCGCcgcagGUGGuGGUGACgcgcuuggugcgCGUGACGCCGc -3' miRNA: 3'- gCCGCG-----CGCC-CUACUG------------GCACUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 611 | 0.72 | 0.215487 |
Target: 5'- gCGGC-CGCGGaaGAUGGCCGgguccagcuUGACGCCc -3' miRNA: 3'- -GCCGcGCGCC--CUACUGGC---------ACUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 27679 | 0.72 | 0.215487 |
Target: 5'- gCGGCG-GCGGuGGUGGUgGUGGCGCCu -3' miRNA: 3'- -GCCGCgCGCC-CUACUGgCACUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 7346 | 0.7 | 0.314669 |
Target: 5'- aCGGcCGCGuCGuGGAUGGCCuggagaagcgcgGUGuCGCCGu -3' miRNA: 3'- -GCC-GCGC-GC-CCUACUGG------------CACuGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 3029 | 0.7 | 0.307565 |
Target: 5'- uCGGCGCGCGuGGcgGuGCCGU--CGCCc -3' miRNA: 3'- -GCCGCGCGC-CCuaC-UGGCAcuGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 10757 | 0.7 | 0.300585 |
Target: 5'- aCGGC-CGCGGGc--ACCGggGGCGCCa -3' miRNA: 3'- -GCCGcGCGCCCuacUGGCa-CUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 16254 | 0.7 | 0.280381 |
Target: 5'- -aGCGCGaugagcgaCGGGAUGGCCGccaGCGCCGc -3' miRNA: 3'- gcCGCGC--------GCCCUACUGGCac-UGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 14493 | 0.7 | 0.300585 |
Target: 5'- gGGCGCGCuGG-UGGCCGgugcUGGCGCg- -3' miRNA: 3'- gCCGCGCGcCCuACUGGC----ACUGCGgc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 49345 | 0.69 | 0.329246 |
Target: 5'- gCGGCGcCGCGGGcgcUGACCacugGGCGCa- -3' miRNA: 3'- -GCCGC-GCGCCCu--ACUGGca--CUGCGgc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 24898 | 0.69 | 0.321896 |
Target: 5'- uGGCccaUGCGGGcAUGGgaauuuCCGUGGCGCCa -3' miRNA: 3'- gCCGc--GCGCCC-UACU------GGCACUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 35636 | 0.69 | 0.344315 |
Target: 5'- aCGGCGCagacGUGGGGUucGACaugGUGcGCGCCGa -3' miRNA: 3'- -GCCGCG----CGCCCUA--CUGg--CAC-UGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 28595 | 0.69 | 0.344315 |
Target: 5'- gGGUGCcCGGGGUGAgUGUGA-GCCc -3' miRNA: 3'- gCCGCGcGCCCUACUgGCACUgCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 36271 | 0.68 | 0.375104 |
Target: 5'- gGGCGCGggaaacgcuaauaCGGGA--GCUGUG-CGCCGa -3' miRNA: 3'- gCCGCGC-------------GCCCUacUGGCACuGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 9467 | 0.68 | 0.375917 |
Target: 5'- uGGUGCccagcgggaucaGCGGGGUGgugacaACCGgGACGCCc -3' miRNA: 3'- gCCGCG------------CGCCCUAC------UGGCaCUGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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