Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18319 | 3' | -61.8 | NC_004681.1 | + | 23462 | 0.67 | 0.453812 |
Target: 5'- aGGCGgGCaGGAgguUGACCaccucgGGCGCCu -3' miRNA: 3'- gCCGCgCGcCCU---ACUGGca----CUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 19193 | 0.66 | 0.52982 |
Target: 5'- --uCGCGCcGGGUGuCCugggugGUGACGCCGg -3' miRNA: 3'- gccGCGCGcCCUACuGG------CACUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 18236 | 0.66 | 0.510325 |
Target: 5'- gGGCGUG-GGGAacgGGCCGaccUGAC-CCGg -3' miRNA: 3'- gCCGCGCgCCCUa--CUGGC---ACUGcGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 18161 | 0.67 | 0.435736 |
Target: 5'- -cGCGgGCGGGAcaaucggaaGACCGcGGCGCUGc -3' miRNA: 3'- gcCGCgCGCCCUa--------CUGGCaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 16254 | 0.7 | 0.280381 |
Target: 5'- -aGCGCGaugagcgaCGGGAUGGCCGccaGCGCCGc -3' miRNA: 3'- gcCGCGC--------GCCCUACUGGCac-UGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 15888 | 0.73 | 0.200173 |
Target: 5'- gCGGcCGCGUGGGuc-ACCGUGAagauCGCCGu -3' miRNA: 3'- -GCC-GCGCGCCCuacUGGCACU----GCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 14662 | 0.67 | 0.426855 |
Target: 5'- aGGCGacuGCGGccguGGUGGCgGUGGCGgCGa -3' miRNA: 3'- gCCGCg--CGCC----CUACUGgCACUGCgGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 14493 | 0.7 | 0.300585 |
Target: 5'- gGGCGCGCuGG-UGGCCGgugcUGGCGCg- -3' miRNA: 3'- gCCGCGCGcCCuACUGGC----ACUGCGgc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 12297 | 0.8 | 0.060635 |
Target: 5'- gCGGCGCGCGGGGaaGCCc-GACGCCGg -3' miRNA: 3'- -GCCGCGCGCCCUacUGGcaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 10757 | 0.7 | 0.300585 |
Target: 5'- aCGGC-CGCGGGc--ACCGggGGCGCCa -3' miRNA: 3'- -GCCGcGCGCCCuacUGGCa-CUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 9514 | 0.67 | 0.435736 |
Target: 5'- gCGGCGaGCGgucuGGAUGACCGaaGGCGCg- -3' miRNA: 3'- -GCCGCgCGC----CCUACUGGCa-CUGCGgc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 9467 | 0.68 | 0.375917 |
Target: 5'- uGGUGCccagcgggaucaGCGGGGUGgugacaACCGgGACGCCc -3' miRNA: 3'- gCCGCG------------CGCCCUAC------UGGCaCUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 7577 | 0.66 | 0.491136 |
Target: 5'- aCGGC-CG-GGGA-GGCCGUGAUGgCa -3' miRNA: 3'- -GCCGcGCgCCCUaCUGGCACUGCgGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 7346 | 0.7 | 0.314669 |
Target: 5'- aCGGcCGCGuCGuGGAUGGCCuggagaagcgcgGUGuCGCCGu -3' miRNA: 3'- -GCC-GCGC-GC-CCUACUGG------------CACuGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 6383 | 0.67 | 0.426855 |
Target: 5'- uGGCGCugucgaGgGGGAggaGGCCccGGCGCCGa -3' miRNA: 3'- gCCGCG------CgCCCUa--CUGGcaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 5274 | 0.66 | 0.50069 |
Target: 5'- gGGCGCGgacaGGGucUGACCGUua-GCCa -3' miRNA: 3'- gCCGCGCg---CCCu-ACUGGCAcugCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 3029 | 0.7 | 0.307565 |
Target: 5'- uCGGCGCGCGuGGcgGuGCCGU--CGCCc -3' miRNA: 3'- -GCCGCGCGC-CCuaC-UGGCAcuGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 2955 | 0.66 | 0.50069 |
Target: 5'- aCGGUcgaGCGCcucgGGGAcggUGACCGUGuaGCGgCGg -3' miRNA: 3'- -GCCG---CGCG----CCCU---ACUGGCAC--UGCgGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 2434 | 0.67 | 0.453812 |
Target: 5'- uGGCGCGCGGcac-GCagaaGUgGGCGCCGa -3' miRNA: 3'- gCCGCGCGCCcuacUGg---CA-CUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 611 | 0.72 | 0.215487 |
Target: 5'- gCGGC-CGCGGaaGAUGGCCGgguccagcuUGACGCCc -3' miRNA: 3'- -GCCGcGCGCC--CUACUGGC---------ACUGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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