miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18319 3' -61.8 NC_004681.1 + 24898 0.69 0.321896
Target:  5'- uGGCccaUGCGGGcAUGGgaauuuCCGUGGCGCCa -3'
miRNA:   3'- gCCGc--GCGCCC-UACU------GGCACUGCGGc -5'
18319 3' -61.8 NC_004681.1 + 50097 0.74 0.159806
Target:  5'- aCGGCGCGCGGGAUGGuggucuCCaggGUGAUGaCGa -3'
miRNA:   3'- -GCCGCGCGCCCUACU------GG---CACUGCgGC- -5'
18319 3' -61.8 NC_004681.1 + 57885 0.73 0.181235
Target:  5'- gCGGCGCGUGGucgcggucuccGGUGGCgGUGuCGCCu -3'
miRNA:   3'- -GCCGCGCGCC-----------CUACUGgCACuGCGGc -5'
18319 3' -61.8 NC_004681.1 + 53755 0.73 0.195283
Target:  5'- cCGGCGCGCuuguGGAUGAcgacaCCGaccagGGCGCCGu -3'
miRNA:   3'- -GCCGCGCGc---CCUACU-----GGCa----CUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 611 0.72 0.215487
Target:  5'- gCGGC-CGCGGaaGAUGGCCGgguccagcuUGACGCCc -3'
miRNA:   3'- -GCCGcGCGCC--CUACUGGC---------ACUGCGGc -5'
18319 3' -61.8 NC_004681.1 + 44820 0.72 0.220811
Target:  5'- aGGCGCcgcagGUGGuGGUGACgcgcuuggugcgCGUGACGCCGc -3'
miRNA:   3'- gCCGCG-----CGCC-CUACUG------------GCACUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 16254 0.7 0.280381
Target:  5'- -aGCGCGaugagcgaCGGGAUGGCCGccaGCGCCGc -3'
miRNA:   3'- gcCGCGC--------GCCCUACUGGCac-UGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 10757 0.7 0.300585
Target:  5'- aCGGC-CGCGGGc--ACCGggGGCGCCa -3'
miRNA:   3'- -GCCGcGCGCCCuacUGGCa-CUGCGGc -5'
18319 3' -61.8 NC_004681.1 + 3029 0.7 0.307565
Target:  5'- uCGGCGCGCGuGGcgGuGCCGU--CGCCc -3'
miRNA:   3'- -GCCGCGCGC-CCuaC-UGGCAcuGCGGc -5'
18319 3' -61.8 NC_004681.1 + 12297 0.8 0.060635
Target:  5'- gCGGCGCGCGGGGaaGCCc-GACGCCGg -3'
miRNA:   3'- -GCCGCGCGCCCUacUGGcaCUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 46881 1.08 0.000521
Target:  5'- aCGGCGCGCGGGAUGACCGUGACGCCGu -3'
miRNA:   3'- -GCCGCGCGCCCUACUGGCACUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 34814 0.68 0.410282
Target:  5'- -aGCGCGCGGGAauucccaagcccgcACCGaaGGCGCCGa -3'
miRNA:   3'- gcCGCGCGCCCUac------------UGGCa-CUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 28595 0.69 0.344315
Target:  5'- gGGUGCcCGGGGUGAgUGUGA-GCCc -3'
miRNA:   3'- gCCGCGcGCCCUACUgGCACUgCGGc -5'
18319 3' -61.8 NC_004681.1 + 14662 0.67 0.426855
Target:  5'- aGGCGacuGCGGccguGGUGGCgGUGGCGgCGa -3'
miRNA:   3'- gCCGCg--CGCC----CUACUGgCACUGCgGC- -5'
18319 3' -61.8 NC_004681.1 + 35636 0.69 0.344315
Target:  5'- aCGGCGCagacGUGGGGUucGACaugGUGcGCGCCGa -3'
miRNA:   3'- -GCCGCG----CGCCCUA--CUGg--CAC-UGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 58753 0.68 0.400871
Target:  5'- uGGCcCGCGGcgcaGgcGGCCGUGGCGCa- -3'
miRNA:   3'- gCCGcGCGCC----CuaCUGGCACUGCGgc -5'
18319 3' -61.8 NC_004681.1 + 9514 0.67 0.435736
Target:  5'- gCGGCGaGCGgucuGGAUGACCGaaGGCGCg- -3'
miRNA:   3'- -GCCGCgCGC----CCUACUGGCa-CUGCGgc -5'
18319 3' -61.8 NC_004681.1 + 19193 0.66 0.52982
Target:  5'- --uCGCGCcGGGUGuCCugggugGUGACGCCGg -3'
miRNA:   3'- gccGCGCGcCCUACuGG------CACUGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 36271 0.68 0.375104
Target:  5'- gGGCGCGggaaacgcuaauaCGGGA--GCUGUG-CGCCGa -3'
miRNA:   3'- gCCGCGC-------------GCCCUacUGGCACuGCGGC- -5'
18319 3' -61.8 NC_004681.1 + 9467 0.68 0.375917
Target:  5'- uGGUGCccagcgggaucaGCGGGGUGgugacaACCGgGACGCCc -3'
miRNA:   3'- gCCGCG------------CGCCCUAC------UGGCaCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.