Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18319 | 3' | -61.8 | NC_004681.1 | + | 3029 | 0.7 | 0.307565 |
Target: 5'- uCGGCGCGCGuGGcgGuGCCGU--CGCCc -3' miRNA: 3'- -GCCGCGCGC-CCuaC-UGGCAcuGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 46881 | 1.08 | 0.000521 |
Target: 5'- aCGGCGCGCGGGAUGACCGUGACGCCGu -3' miRNA: 3'- -GCCGCGCGCCCUACUGGCACUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 12297 | 0.8 | 0.060635 |
Target: 5'- gCGGCGCGCGGGGaaGCCc-GACGCCGg -3' miRNA: 3'- -GCCGCGCGCCCUacUGGcaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 50097 | 0.74 | 0.159806 |
Target: 5'- aCGGCGCGCGGGAUGGuggucuCCaggGUGAUGaCGa -3' miRNA: 3'- -GCCGCGCGCCCUACU------GG---CACUGCgGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 57885 | 0.73 | 0.181235 |
Target: 5'- gCGGCGCGUGGucgcggucuccGGUGGCgGUGuCGCCu -3' miRNA: 3'- -GCCGCGCGCC-----------CUACUGgCACuGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 53755 | 0.73 | 0.195283 |
Target: 5'- cCGGCGCGCuuguGGAUGAcgacaCCGaccagGGCGCCGu -3' miRNA: 3'- -GCCGCGCGc---CCUACU-----GGCa----CUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 611 | 0.72 | 0.215487 |
Target: 5'- gCGGC-CGCGGaaGAUGGCCGgguccagcuUGACGCCc -3' miRNA: 3'- -GCCGcGCGCC--CUACUGGC---------ACUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 44820 | 0.72 | 0.220811 |
Target: 5'- aGGCGCcgcagGUGGuGGUGACgcgcuuggugcgCGUGACGCCGc -3' miRNA: 3'- gCCGCG-----CGCC-CUACUG------------GCACUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 16254 | 0.7 | 0.280381 |
Target: 5'- -aGCGCGaugagcgaCGGGAUGGCCGccaGCGCCGc -3' miRNA: 3'- gcCGCGC--------GCCCUACUGGCac-UGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 10757 | 0.7 | 0.300585 |
Target: 5'- aCGGC-CGCGGGc--ACCGggGGCGCCa -3' miRNA: 3'- -GCCGcGCGCCCuacUGGCa-CUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 27679 | 0.72 | 0.215487 |
Target: 5'- gCGGCG-GCGGuGGUGGUgGUGGCGCCu -3' miRNA: 3'- -GCCGCgCGCC-CUACUGgCACUGCGGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 14493 | 0.7 | 0.300585 |
Target: 5'- gGGCGCGCuGG-UGGCCGgugcUGGCGCg- -3' miRNA: 3'- gCCGCGCGcCCuACUGGC----ACUGCGgc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 49345 | 0.69 | 0.329246 |
Target: 5'- gCGGCGcCGCGGGcgcUGACCacugGGCGCa- -3' miRNA: 3'- -GCCGC-GCGCCCu--ACUGGca--CUGCGgc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 6383 | 0.67 | 0.426855 |
Target: 5'- uGGCGCugucgaGgGGGAggaGGCCccGGCGCCGa -3' miRNA: 3'- gCCGCG------CgCCCUa--CUGGcaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 7577 | 0.66 | 0.491136 |
Target: 5'- aCGGC-CG-GGGA-GGCCGUGAUGgCa -3' miRNA: 3'- -GCCGcGCgCCCUaCUGGCACUGCgGc -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 62393 | 0.66 | 0.509358 |
Target: 5'- cCGGCGacaucCGGGuacuggcAUGGCUG-GGCGCCGa -3' miRNA: 3'- -GCCGCgc---GCCC-------UACUGGCaCUGCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 40445 | 0.66 | 0.519062 |
Target: 5'- uCGGCGCccuugagGCGGccGAUGACauUGAaCGCCGc -3' miRNA: 3'- -GCCGCG-------CGCC--CUACUGgcACU-GCGGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 27298 | 0.66 | 0.52982 |
Target: 5'- gGGCGUccaucGCGGuGAacaucACCGUGGCGCaCGa -3' miRNA: 3'- gCCGCG-----CGCC-CUac---UGGCACUGCG-GC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 32652 | 0.66 | 0.52982 |
Target: 5'- aCGGUG-GCGGGGaccugGGCCGacaUGugGuCCGg -3' miRNA: 3'- -GCCGCgCGCCCUa----CUGGC---ACugC-GGC- -5' |
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18319 | 3' | -61.8 | NC_004681.1 | + | 15888 | 0.73 | 0.200173 |
Target: 5'- gCGGcCGCGUGGGuc-ACCGUGAagauCGCCGu -3' miRNA: 3'- -GCC-GCGCGCCCuacUGGCACU----GCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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