Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 22398 | 0.66 | 0.866764 |
Target: 5'- cGCUGGUCaCCccgGCCGCG-----GACGGCa -3' miRNA: 3'- -CGGCCAG-GG---UGGUGCaaguaCUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 18916 | 0.66 | 0.866764 |
Target: 5'- gGCCGGUCCCcaggcuCC-CG-UCGcGGgAGCg -3' miRNA: 3'- -CGGCCAGGGu-----GGuGCaAGUaCUgUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 13125 | 0.66 | 0.850635 |
Target: 5'- cCCGcugCCCGCCACcgcccUUCGUGGCAcgGCg -3' miRNA: 3'- cGGCca-GGGUGGUGc----AAGUACUGU--CG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 16176 | 0.66 | 0.84224 |
Target: 5'- cGCU-GUCCUcgGCCAUcUUCAUGGCAGa -3' miRNA: 3'- -CGGcCAGGG--UGGUGcAAGUACUGUCg -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 20386 | 0.66 | 0.84224 |
Target: 5'- aGCCGGaagacggCCCGCCugagaccuCGUUCAUcuCGGUg -3' miRNA: 3'- -CGGCCa------GGGUGGu-------GCAAGUAcuGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 55643 | 0.66 | 0.84224 |
Target: 5'- aGCCGGugauUCCgACUAgGgccuugauggUUAUGGCGGCg -3' miRNA: 3'- -CGGCC----AGGgUGGUgCa---------AGUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 66221 | 0.66 | 0.833635 |
Target: 5'- gGUCGGUUCCGuuGCacUUCGUGcaguGCAGCa -3' miRNA: 3'- -CGGCCAGGGUggUGc-AAGUAC----UGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 64487 | 0.66 | 0.824828 |
Target: 5'- cGCCGGUCCauuCCugGUcgccggUCAccUGACGa- -3' miRNA: 3'- -CGGCCAGGgu-GGugCA------AGU--ACUGUcg -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 30566 | 0.67 | 0.819451 |
Target: 5'- aCCGaGUCCUACCggcgcaagcgccaagGCgGUUCGcugccUGACGGCg -3' miRNA: 3'- cGGC-CAGGGUGG---------------UG-CAAGU-----ACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 6687 | 0.67 | 0.815829 |
Target: 5'- uGCCGcGgCCCAUgGCGcccuUGACGGCg -3' miRNA: 3'- -CGGC-CaGGGUGgUGCaaguACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 10510 | 0.67 | 0.815829 |
Target: 5'- -gCGGUCCagaaugGCCugG-UCAgccuugGACAGCg -3' miRNA: 3'- cgGCCAGGg-----UGGugCaAGUa-----CUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 14674 | 0.67 | 0.814918 |
Target: 5'- uGCCGGUgCCgaaggcgACUGCGgccgUgGUGGCGGUg -3' miRNA: 3'- -CGGCCAgGG-------UGGUGCa---AgUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 24569 | 0.67 | 0.806645 |
Target: 5'- cGCUGGaacucUCCCggcGCCuCGUUgCcgGACAGCc -3' miRNA: 3'- -CGGCC-----AGGG---UGGuGCAA-GuaCUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 18057 | 0.67 | 0.805718 |
Target: 5'- cGCCGcggucuuccgauuGUCCCGcCCGCGggUAUGGgcauCGGCa -3' miRNA: 3'- -CGGC-------------CAGGGU-GGUGCaaGUACU----GUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 4849 | 0.67 | 0.787767 |
Target: 5'- cGCCGuaCCCACCGCa---GUGAUGGCu -3' miRNA: 3'- -CGGCcaGGGUGGUGcaagUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 33298 | 0.67 | 0.787767 |
Target: 5'- cGCCGGUCgCGCCGCGguguacgcCggGACGuucGCc -3' miRNA: 3'- -CGGCCAGgGUGGUGCaa------GuaCUGU---CG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 42254 | 0.67 | 0.778092 |
Target: 5'- uGCUGGUCCCGcCCGCGgaaggCGccuucACGGCc -3' miRNA: 3'- -CGGCCAGGGU-GGUGCaa---GUac---UGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 15221 | 0.68 | 0.768273 |
Target: 5'- cGUCGG-CCCGCUggGCG-UCAUGA-AGCa -3' miRNA: 3'- -CGGCCaGGGUGG--UGCaAGUACUgUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 8735 | 0.68 | 0.75832 |
Target: 5'- aGCCGGgaCCUACC-CGUUCuc--CAGCg -3' miRNA: 3'- -CGGCCa-GGGUGGuGCAAGuacuGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 60681 | 0.68 | 0.75832 |
Target: 5'- gGCCucGUCgagCACCACGUUCGUcGGcCAGCg -3' miRNA: 3'- -CGGc-CAGg--GUGGUGCAAGUA-CU-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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