miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18319 5' -54.5 NC_004681.1 + 759 0.68 0.727768
Target:  5'- cCCGGcCCUGCCGCc--CAUGACGGg -3'
miRNA:   3'- cGGCCaGGGUGGUGcaaGUACUGUCg -5'
18319 5' -54.5 NC_004681.1 + 4849 0.67 0.787767
Target:  5'- cGCCGuaCCCACCGCa---GUGAUGGCu -3'
miRNA:   3'- -CGGCcaGGGUGGUGcaagUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 6687 0.67 0.815829
Target:  5'- uGCCGcGgCCCAUgGCGcccuUGACGGCg -3'
miRNA:   3'- -CGGC-CaGGGUGgUGCaaguACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 8735 0.68 0.75832
Target:  5'- aGCCGGgaCCUACC-CGUUCuc--CAGCg -3'
miRNA:   3'- -CGGCCa-GGGUGGuGCAAGuacuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 10510 0.67 0.815829
Target:  5'- -gCGGUCCagaaugGCCugG-UCAgccuugGACAGCg -3'
miRNA:   3'- cgGCCAGGg-----UGGugCaAGUa-----CUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 13125 0.66 0.850635
Target:  5'- cCCGcugCCCGCCACcgcccUUCGUGGCAcgGCg -3'
miRNA:   3'- cGGCca-GGGUGGUGc----AAGUACUGU--CG- -5'
18319 5' -54.5 NC_004681.1 + 14674 0.67 0.814918
Target:  5'- uGCCGGUgCCgaaggcgACUGCGgccgUgGUGGCGGUg -3'
miRNA:   3'- -CGGCCAgGG-------UGGUGCa---AgUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 15221 0.68 0.768273
Target:  5'- cGUCGG-CCCGCUggGCG-UCAUGA-AGCa -3'
miRNA:   3'- -CGGCCaGGGUGG--UGCaAGUACUgUCG- -5'
18319 5' -54.5 NC_004681.1 + 16176 0.66 0.84224
Target:  5'- cGCU-GUCCUcgGCCAUcUUCAUGGCAGa -3'
miRNA:   3'- -CGGcCAGGG--UGGUGcAAGUACUGUCg -5'
18319 5' -54.5 NC_004681.1 + 16539 0.68 0.717388
Target:  5'- -aCGGUcCCCACgGCGgcCGUGguauGCAGCu -3'
miRNA:   3'- cgGCCA-GGGUGgUGCaaGUAC----UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 16759 0.7 0.65379
Target:  5'- uCCGGUCCUGCCuguCGacacgUCGgugccUGGCGGCa -3'
miRNA:   3'- cGGCCAGGGUGGu--GCa----AGU-----ACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 17320 0.7 0.609802
Target:  5'- aGCCGuaUCCGCCAgCGUUCAUGuucaugccgaaguACGGCa -3'
miRNA:   3'- -CGGCcaGGGUGGU-GCAAGUAC-------------UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 17920 0.74 0.391461
Target:  5'- gGCCGGUgCCuugcgcggccGCCGCGUUgAUGuCGGCc -3'
miRNA:   3'- -CGGCCAgGG----------UGGUGCAAgUACuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 18057 0.67 0.805718
Target:  5'- cGCCGcggucuuccgauuGUCCCGcCCGCGggUAUGGgcauCGGCa -3'
miRNA:   3'- -CGGC-------------CAGGGU-GGUGCaaGUACU----GUCG- -5'
18319 5' -54.5 NC_004681.1 + 18916 0.66 0.866764
Target:  5'- gGCCGGUCCCcaggcuCC-CG-UCGcGGgAGCg -3'
miRNA:   3'- -CGGCCAGGGu-----GGuGCaAGUaCUgUCG- -5'
18319 5' -54.5 NC_004681.1 + 19918 0.68 0.727768
Target:  5'- aGCCGGggUCACCGCGcagCAcgcgguacUGGCGGCc -3'
miRNA:   3'- -CGGCCagGGUGGUGCaa-GU--------ACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 20386 0.66 0.84224
Target:  5'- aGCCGGaagacggCCCGCCugagaccuCGUUCAUcuCGGUg -3'
miRNA:   3'- -CGGCCa------GGGUGGu-------GCAAGUAcuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 21358 0.76 0.332973
Target:  5'- aCgGGUCCUACCggcACGUUCAUcGACGGUc -3'
miRNA:   3'- cGgCCAGGGUGG---UGCAAGUA-CUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 22398 0.66 0.866764
Target:  5'- cGCUGGUCaCCccgGCCGCG-----GACGGCa -3'
miRNA:   3'- -CGGCCAG-GG---UGGUGCaaguaCUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 24569 0.67 0.806645
Target:  5'- cGCUGGaacucUCCCggcGCCuCGUUgCcgGACAGCc -3'
miRNA:   3'- -CGGCC-----AGGG---UGGuGCAA-GuaCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.