miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18319 5' -54.5 NC_004681.1 + 26861 0.82 0.139407
Target:  5'- gGCCGGUcCCCACCGCcaccUAUGGCGGCg -3'
miRNA:   3'- -CGGCCA-GGGUGGUGcaa-GUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 28755 0.68 0.738057
Target:  5'- -aCGGUgUCGCCAUggaGUUCGUGGCccAGCu -3'
miRNA:   3'- cgGCCAgGGUGGUG---CAAGUACUG--UCG- -5'
18319 5' -54.5 NC_004681.1 + 29626 0.72 0.505876
Target:  5'- aGCCGGaagccgUCCaCACCGgGUUggaugcgaaCGUGACAGCc -3'
miRNA:   3'- -CGGCC------AGG-GUGGUgCAA---------GUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 30566 0.67 0.819451
Target:  5'- aCCGaGUCCUACCggcgcaagcgccaagGCgGUUCGcugccUGACGGCg -3'
miRNA:   3'- cGGC-CAGGGUGG---------------UG-CAAGU-----ACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 31325 0.73 0.465969
Target:  5'- cGCCGGUCCCccaGCCACGcugCgAUGuccucgaaaGCGGCg -3'
miRNA:   3'- -CGGCCAGGG---UGGUGCaa-G-UAC---------UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 33298 0.67 0.787767
Target:  5'- cGCCGGUCgCGCCGCGguguacgcCggGACGuucGCc -3'
miRNA:   3'- -CGGCCAGgGUGGUGCaa------GuaCUGU---CG- -5'
18319 5' -54.5 NC_004681.1 + 33452 0.68 0.723627
Target:  5'- gGCCGGUCUCAgCCAgCGUgaugugCGggcgggugcccugGACGGCg -3'
miRNA:   3'- -CGGCCAGGGU-GGU-GCAa-----GUa------------CUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 42254 0.67 0.778092
Target:  5'- uGCUGGUCCCGcCCGCGgaaggCGccuucACGGCc -3'
miRNA:   3'- -CGGCCAGGGU-GGUGCaa---GUac---UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 43373 0.7 0.632333
Target:  5'- aGCUcGUCCCaacucgucguaGCCACGUUCA--ACGGCu -3'
miRNA:   3'- -CGGcCAGGG-----------UGGUGCAAGUacUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 46843 1.15 0.000785
Target:  5'- cGCCGGUCCCACCACGUUCAUGACAGCg -3'
miRNA:   3'- -CGGCCAGGGUGGUGCAAGUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 48767 0.69 0.68581
Target:  5'- aGCUGG-CCCGCCAgGgUUCccGcCAGCg -3'
miRNA:   3'- -CGGCCaGGGUGGUgC-AAGuaCuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 55643 0.66 0.84224
Target:  5'- aGCCGGugauUCCgACUAgGgccuugauggUUAUGGCGGCg -3'
miRNA:   3'- -CGGCC----AGGgUGGUgCa---------AGUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 56306 0.68 0.738057
Target:  5'- cGCCGGUCCagGCCACcgacucaagGggCAUGAgGaGCg -3'
miRNA:   3'- -CGGCCAGGg-UGGUG---------CaaGUACUgU-CG- -5'
18319 5' -54.5 NC_004681.1 + 57465 0.69 0.700618
Target:  5'- cGCgCGGUCCCuggagcucauccucuACgGCGagCGUGAgAGCg -3'
miRNA:   3'- -CG-GCCAGGG---------------UGgUGCaaGUACUgUCG- -5'
18319 5' -54.5 NC_004681.1 + 59795 0.71 0.578837
Target:  5'- gGCCGcacUCCCAgCAgGgggCGUGGCGGCg -3'
miRNA:   3'- -CGGCc--AGGGUgGUgCaa-GUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 60681 0.68 0.75832
Target:  5'- gGCCucGUCgagCACCACGUUCGUcGGcCAGCg -3'
miRNA:   3'- -CGGc-CAGg--GUGGUGCAAGUA-CU-GUCG- -5'
18319 5' -54.5 NC_004681.1 + 61343 0.75 0.34657
Target:  5'- cGCUGGccuuucuggaggcuUUCCGCCACGUUCucGGCGGCg -3'
miRNA:   3'- -CGGCC--------------AGGGUGGUGCAAGuaCUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 64487 0.66 0.824828
Target:  5'- cGCCGGUCCauuCCugGUcgccggUCAccUGACGa- -3'
miRNA:   3'- -CGGCCAGGgu-GGugCA------AGU--ACUGUcg -5'
18319 5' -54.5 NC_004681.1 + 66221 0.66 0.833635
Target:  5'- gGUCGGUUCCGuuGCacUUCGUGcaguGCAGCa -3'
miRNA:   3'- -CGGCCAGGGUggUGc-AAGUAC----UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 70731 0.7 0.632333
Target:  5'- -aCGGUCUC-CC-CGUugUCGUGACGGUg -3'
miRNA:   3'- cgGCCAGGGuGGuGCA--AGUACUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.