Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 72312 | 0.68 | 0.737033 |
Target: 5'- cGUCGucGUCCCACCAUGUgacacggUCAaugacguacugGACAGCc -3' miRNA: 3'- -CGGC--CAGGGUGGUGCA-------AGUa----------CUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 70731 | 0.7 | 0.632333 |
Target: 5'- -aCGGUCUC-CC-CGUugUCGUGACGGUg -3' miRNA: 3'- cgGCCAGGGuGGuGCA--AGUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 66221 | 0.66 | 0.833635 |
Target: 5'- gGUCGGUUCCGuuGCacUUCGUGcaguGCAGCa -3' miRNA: 3'- -CGGCCAGGGUggUGc-AAGUAC----UGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 64487 | 0.66 | 0.824828 |
Target: 5'- cGCCGGUCCauuCCugGUcgccggUCAccUGACGa- -3' miRNA: 3'- -CGGCCAGGgu-GGugCA------AGU--ACUGUcg -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 61343 | 0.75 | 0.34657 |
Target: 5'- cGCUGGccuuucuggaggcuUUCCGCCACGUUCucGGCGGCg -3' miRNA: 3'- -CGGCC--------------AGGGUGGUGCAAGuaCUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 60681 | 0.68 | 0.75832 |
Target: 5'- gGCCucGUCgagCACCACGUUCGUcGGcCAGCg -3' miRNA: 3'- -CGGc-CAGg--GUGGUGCAAGUA-CU-GUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 59795 | 0.71 | 0.578837 |
Target: 5'- gGCCGcacUCCCAgCAgGgggCGUGGCGGCg -3' miRNA: 3'- -CGGCc--AGGGUgGUgCaa-GUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 57465 | 0.69 | 0.700618 |
Target: 5'- cGCgCGGUCCCuggagcucauccucuACgGCGagCGUGAgAGCg -3' miRNA: 3'- -CG-GCCAGGG---------------UGgUGCaaGUACUgUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 56306 | 0.68 | 0.738057 |
Target: 5'- cGCCGGUCCagGCCACcgacucaagGggCAUGAgGaGCg -3' miRNA: 3'- -CGGCCAGGg-UGGUG---------CaaGUACUgU-CG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 55643 | 0.66 | 0.84224 |
Target: 5'- aGCCGGugauUCCgACUAgGgccuugauggUUAUGGCGGCg -3' miRNA: 3'- -CGGCC----AGGgUGGUgCa---------AGUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 48767 | 0.69 | 0.68581 |
Target: 5'- aGCUGG-CCCGCCAgGgUUCccGcCAGCg -3' miRNA: 3'- -CGGCCaGGGUGGUgC-AAGuaCuGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 46843 | 1.15 | 0.000785 |
Target: 5'- cGCCGGUCCCACCACGUUCAUGACAGCg -3' miRNA: 3'- -CGGCCAGGGUGGUGCAAGUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 43373 | 0.7 | 0.632333 |
Target: 5'- aGCUcGUCCCaacucgucguaGCCACGUUCA--ACGGCu -3' miRNA: 3'- -CGGcCAGGG-----------UGGUGCAAGUacUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 42254 | 0.67 | 0.778092 |
Target: 5'- uGCUGGUCCCGcCCGCGgaaggCGccuucACGGCc -3' miRNA: 3'- -CGGCCAGGGU-GGUGCaa---GUac---UGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 33452 | 0.68 | 0.723627 |
Target: 5'- gGCCGGUCUCAgCCAgCGUgaugugCGggcgggugcccugGACGGCg -3' miRNA: 3'- -CGGCCAGGGU-GGU-GCAa-----GUa------------CUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 33298 | 0.67 | 0.787767 |
Target: 5'- cGCCGGUCgCGCCGCGguguacgcCggGACGuucGCc -3' miRNA: 3'- -CGGCCAGgGUGGUGCaa------GuaCUGU---CG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 31325 | 0.73 | 0.465969 |
Target: 5'- cGCCGGUCCCccaGCCACGcugCgAUGuccucgaaaGCGGCg -3' miRNA: 3'- -CGGCCAGGG---UGGUGCaa-G-UAC---------UGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 30566 | 0.67 | 0.819451 |
Target: 5'- aCCGaGUCCUACCggcgcaagcgccaagGCgGUUCGcugccUGACGGCg -3' miRNA: 3'- cGGC-CAGGGUGG---------------UG-CAAGU-----ACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 29626 | 0.72 | 0.505876 |
Target: 5'- aGCCGGaagccgUCCaCACCGgGUUggaugcgaaCGUGACAGCc -3' miRNA: 3'- -CGGCC------AGG-GUGGUgCAA---------GUACUGUCG- -5' |
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18319 | 5' | -54.5 | NC_004681.1 | + | 28755 | 0.68 | 0.738057 |
Target: 5'- -aCGGUgUCGCCAUggaGUUCGUGGCccAGCu -3' miRNA: 3'- cgGCCAgGGUGGUG---CAAGUACUG--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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