miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18319 5' -54.5 NC_004681.1 + 28755 0.68 0.738057
Target:  5'- -aCGGUgUCGCCAUggaGUUCGUGGCccAGCu -3'
miRNA:   3'- cgGCCAgGGUGGUG---CAAGUACUG--UCG- -5'
18319 5' -54.5 NC_004681.1 + 8735 0.68 0.75832
Target:  5'- aGCCGGgaCCUACC-CGUUCuc--CAGCg -3'
miRNA:   3'- -CGGCCa-GGGUGGuGCAAGuacuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 19918 0.68 0.727768
Target:  5'- aGCCGGggUCACCGCGcagCAcgcgguacUGGCGGCc -3'
miRNA:   3'- -CGGCCagGGUGGUGCaa-GU--------ACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 56306 0.68 0.738057
Target:  5'- cGCCGGUCCagGCCACcgacucaagGggCAUGAgGaGCg -3'
miRNA:   3'- -CGGCCAGGg-UGGUG---------CaaGUACUgU-CG- -5'
18319 5' -54.5 NC_004681.1 + 60681 0.68 0.75832
Target:  5'- gGCCucGUCgagCACCACGUUCGUcGGcCAGCg -3'
miRNA:   3'- -CGGc-CAGg--GUGGUGCAAGUA-CU-GUCG- -5'
18319 5' -54.5 NC_004681.1 + 24569 0.67 0.806645
Target:  5'- cGCUGGaacucUCCCggcGCCuCGUUgCcgGACAGCc -3'
miRNA:   3'- -CGGCC-----AGGG---UGGuGCAA-GuaCUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 14674 0.67 0.814918
Target:  5'- uGCCGGUgCCgaaggcgACUGCGgccgUgGUGGCGGUg -3'
miRNA:   3'- -CGGCCAgGG-------UGGUGCa---AgUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 10510 0.67 0.815829
Target:  5'- -gCGGUCCagaaugGCCugG-UCAgccuugGACAGCg -3'
miRNA:   3'- cgGCCAGGg-----UGGugCaAGUa-----CUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 6687 0.67 0.815829
Target:  5'- uGCCGcGgCCCAUgGCGcccuUGACGGCg -3'
miRNA:   3'- -CGGC-CaGGGUGgUGCaaguACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 66221 0.66 0.833635
Target:  5'- gGUCGGUUCCGuuGCacUUCGUGcaguGCAGCa -3'
miRNA:   3'- -CGGCCAGGGUggUGc-AAGUAC----UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 33452 0.68 0.723627
Target:  5'- gGCCGGUCUCAgCCAgCGUgaugugCGggcgggugcccugGACGGCg -3'
miRNA:   3'- -CGGCCAGGGU-GGU-GCAa-----GUa------------CUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 48767 0.69 0.68581
Target:  5'- aGCUGG-CCCGCCAgGgUUCccGcCAGCg -3'
miRNA:   3'- -CGGCCaGGGUGGUgC-AAGuaCuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 46843 1.15 0.000785
Target:  5'- cGCCGGUCCCACCACGUUCAUGACAGCg -3'
miRNA:   3'- -CGGCCAGGGUGGUGCAAGUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 61343 0.75 0.34657
Target:  5'- cGCUGGccuuucuggaggcuUUCCGCCACGUUCucGGCGGCg -3'
miRNA:   3'- -CGGCC--------------AGGGUGGUGCAAGuaCUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 17920 0.74 0.391461
Target:  5'- gGCCGGUgCCuugcgcggccGCCGCGUUgAUGuCGGCc -3'
miRNA:   3'- -CGGCCAgGG----------UGGUGCAAgUACuGUCG- -5'
18319 5' -54.5 NC_004681.1 + 31325 0.73 0.465969
Target:  5'- cGCCGGUCCCccaGCCACGcugCgAUGuccucgaaaGCGGCg -3'
miRNA:   3'- -CGGCCAGGG---UGGUGCaa-G-UAC---------UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 29626 0.72 0.505876
Target:  5'- aGCCGGaagccgUCCaCACCGgGUUggaugcgaaCGUGACAGCc -3'
miRNA:   3'- -CGGCC------AGG-GUGGUgCAA---------GUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 59795 0.71 0.578837
Target:  5'- gGCCGcacUCCCAgCAgGgggCGUGGCGGCg -3'
miRNA:   3'- -CGGCc--AGGGUgGUgCaa-GUACUGUCG- -5'
18319 5' -54.5 NC_004681.1 + 17320 0.7 0.609802
Target:  5'- aGCCGuaUCCGCCAgCGUUCAUGuucaugccgaaguACGGCa -3'
miRNA:   3'- -CGGCcaGGGUGGU-GCAAGUAC-------------UGUCG- -5'
18319 5' -54.5 NC_004681.1 + 43373 0.7 0.632333
Target:  5'- aGCUcGUCCCaacucgucguaGCCACGUUCA--ACGGCu -3'
miRNA:   3'- -CGGcCAGGG-----------UGGUGCAAGUacUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.