Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 46843 | 1.15 | 0.000785 |
Target: 5'- cGCCGGUCCCACCACGUUCAUGACAGCg -3' miRNA: 3'- -CGGCCAGGGUGGUGCAAGUACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 56306 | 0.68 | 0.738057 |
Target: 5'- cGCCGGUCCagGCCACcgacucaagGggCAUGAgGaGCg -3' miRNA: 3'- -CGGCCAGGg-UGGUG---------CaaGUACUgU-CG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 48767 | 0.69 | 0.68581 |
Target: 5'- aGCUGG-CCCGCCAgGgUUCccGcCAGCg -3' miRNA: 3'- -CGGCCaGGGUGGUgC-AAGuaCuGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 43373 | 0.7 | 0.632333 |
Target: 5'- aGCUcGUCCCaacucgucguaGCCACGUUCA--ACGGCu -3' miRNA: 3'- -CGGcCAGGG-----------UGGUGCAAGUacUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 59795 | 0.71 | 0.578837 |
Target: 5'- gGCCGcacUCCCAgCAgGgggCGUGGCGGCg -3' miRNA: 3'- -CGGCc--AGGGUgGUgCaa-GUACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 29626 | 0.72 | 0.505876 |
Target: 5'- aGCCGGaagccgUCCaCACCGgGUUggaugcgaaCGUGACAGCc -3' miRNA: 3'- -CGGCC------AGG-GUGGUgCAA---------GUACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 66221 | 0.66 | 0.833635 |
Target: 5'- gGUCGGUUCCGuuGCacUUCGUGcaguGCAGCa -3' miRNA: 3'- -CGGCCAGGGUggUGc-AAGUAC----UGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 6687 | 0.67 | 0.815829 |
Target: 5'- uGCCGcGgCCCAUgGCGcccuUGACGGCg -3' miRNA: 3'- -CGGC-CaGGGUGgUGCaaguACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 24569 | 0.67 | 0.806645 |
Target: 5'- cGCUGGaacucUCCCggcGCCuCGUUgCcgGACAGCc -3' miRNA: 3'- -CGGCC-----AGGG---UGGuGCAA-GuaCUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 19918 | 0.68 | 0.727768 |
Target: 5'- aGCCGGggUCACCGCGcagCAcgcgguacUGGCGGCc -3' miRNA: 3'- -CGGCCagGGUGGUGCaa-GU--------ACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 17320 | 0.7 | 0.609802 |
Target: 5'- aGCCGuaUCCGCCAgCGUUCAUGuucaugccgaaguACGGCa -3' miRNA: 3'- -CGGCcaGGGUGGU-GCAAGUAC-------------UGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 61343 | 0.75 | 0.34657 |
Target: 5'- cGCUGGccuuucuggaggcuUUCCGCCACGUUCucGGCGGCg -3' miRNA: 3'- -CGGCC--------------AGGGUGGUGCAAGuaCUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 14674 | 0.67 | 0.814918 |
Target: 5'- uGCCGGUgCCgaaggcgACUGCGgccgUgGUGGCGGUg -3' miRNA: 3'- -CGGCCAgGG-------UGGUGCa---AgUACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 17920 | 0.74 | 0.391461 |
Target: 5'- gGCCGGUgCCuugcgcggccGCCGCGUUgAUGuCGGCc -3' miRNA: 3'- -CGGCCAgGG----------UGGUGCAAgUACuGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 33452 | 0.68 | 0.723627 |
Target: 5'- gGCCGGUCUCAgCCAgCGUgaugugCGggcgggugcccugGACGGCg -3' miRNA: 3'- -CGGCCAGGGU-GGU-GCAa-----GUa------------CUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 10510 | 0.67 | 0.815829 |
Target: 5'- -gCGGUCCagaaugGCCugG-UCAgccuugGACAGCg -3' miRNA: 3'- cgGCCAGGg-----UGGugCaAGUa-----CUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 55643 | 0.66 | 0.84224 |
Target: 5'- aGCCGGugauUCCgACUAgGgccuugauggUUAUGGCGGCg -3' miRNA: 3'- -CGGCC----AGGgUGGUgCa---------AGUACUGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 31325 | 0.73 | 0.465969 |
Target: 5'- cGCCGGUCCCccaGCCACGcugCgAUGuccucgaaaGCGGCg -3' miRNA: 3'- -CGGCCAGGG---UGGUGCaa-G-UAC---------UGUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 60681 | 0.68 | 0.75832 |
Target: 5'- gGCCucGUCgagCACCACGUUCGUcGGcCAGCg -3' miRNA: 3'- -CGGc-CAGg--GUGGUGCAAGUA-CU-GUCG- -5' |
|||||||
18319 | 5' | -54.5 | NC_004681.1 | + | 18057 | 0.67 | 0.805718 |
Target: 5'- cGCCGcggucuuccgauuGUCCCGcCCGCGggUAUGGgcauCGGCa -3' miRNA: 3'- -CGGC-------------CAGGGU-GGUGCaaGUACU----GUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home