miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18320 3' -60.4 NC_004681.1 + 30044 0.66 0.527895
Target:  5'- cCGCCgCGGCCAUCGGccUCGgaGCuCCcGCUg -3'
miRNA:   3'- -GUGG-GUCGGUAGCC--AGUg-CG-GGaCGA- -5'
18320 3' -60.4 NC_004681.1 + 28390 0.66 0.527895
Target:  5'- aACCCcagucaauGGCCuggCGGUCAC-CCCgGCUc -3'
miRNA:   3'- gUGGG--------UCGGua-GCCAGUGcGGGaCGA- -5'
18320 3' -60.4 NC_004681.1 + 72122 0.66 0.508834
Target:  5'- aGCCCAGCCucaccguugcgaccuUCGaucacGUUGCGCUCUGCc -3'
miRNA:   3'- gUGGGUCGGu--------------AGC-----CAGUGCGGGACGa -5'
18320 3' -60.4 NC_004681.1 + 33878 0.66 0.507839
Target:  5'- aCACCaAGCCGg-GGUgCAaGCCCUGCg -3'
miRNA:   3'- -GUGGgUCGGUagCCA-GUgCGGGACGa -5'
18320 3' -60.4 NC_004681.1 + 19446 0.66 0.497932
Target:  5'- gACCCGGUCgaacucGUCGGUCuCGUCCUcGUa -3'
miRNA:   3'- gUGGGUCGG------UAGCCAGuGCGGGA-CGa -5'
18320 3' -60.4 NC_004681.1 + 16443 0.67 0.478385
Target:  5'- cCACCCAccGCCGcagCGGagAUGgCCUGCUc -3'
miRNA:   3'- -GUGGGU--CGGUa--GCCagUGCgGGACGA- -5'
18320 3' -60.4 NC_004681.1 + 24993 0.67 0.468754
Target:  5'- uGCCCAcuuGCCGg-GGUCGcCGCCCUcGCc -3'
miRNA:   3'- gUGGGU---CGGUagCCAGU-GCGGGA-CGa -5'
18320 3' -60.4 NC_004681.1 + 74084 0.67 0.449797
Target:  5'- uGCCCGGuCCAUCaGUCcaucCGCCCgacGCa -3'
miRNA:   3'- gUGGGUC-GGUAGcCAGu---GCGGGa--CGa -5'
18320 3' -60.4 NC_004681.1 + 34290 0.67 0.440478
Target:  5'- cCAUCCGGCCugcguGUCaauUCACGCCCUaGCUc -3'
miRNA:   3'- -GUGGGUCGG-----UAGcc-AGUGCGGGA-CGA- -5'
18320 3' -60.4 NC_004681.1 + 69148 0.68 0.378492
Target:  5'- gGCgCAGCCAUCGGUguCGCaggUGCg -3'
miRNA:   3'- gUGgGUCGGUAGCCAguGCGgg-ACGa -5'
18320 3' -60.4 NC_004681.1 + 14783 0.69 0.361889
Target:  5'- aCGCCCuGGCCAUCcugaaGGcUgGCGCCCaGCUg -3'
miRNA:   3'- -GUGGG-UCGGUAG-----CC-AgUGCGGGaCGA- -5'
18320 3' -60.4 NC_004681.1 + 9544 0.69 0.353779
Target:  5'- gCugUUGGUCAUCugcauGGUCACGCCCUcGCg -3'
miRNA:   3'- -GugGGUCGGUAG-----CCAGUGCGGGA-CGa -5'
18320 3' -60.4 NC_004681.1 + 33783 0.69 0.337948
Target:  5'- gGCCCAGUaCAUgCGGUCACGCgC-GCg -3'
miRNA:   3'- gUGGGUCG-GUA-GCCAGUGCGgGaCGa -5'
18320 3' -60.4 NC_004681.1 + 13277 0.7 0.286655
Target:  5'- -gUCCAgGCCAUCGaGUCcgaggGCGCCCUGUc -3'
miRNA:   3'- guGGGU-CGGUAGC-CAG-----UGCGGGACGa -5'
18320 3' -60.4 NC_004681.1 + 50925 0.71 0.260203
Target:  5'- aGCCCuGCUgcaucGUCGGUCACGCgCUGg- -3'
miRNA:   3'- gUGGGuCGG-----UAGCCAGUGCGgGACga -5'
18320 3' -60.4 NC_004681.1 + 14589 0.72 0.235775
Target:  5'- aGCaCCGGCCAcCaG-CGCGCCCUGCUc -3'
miRNA:   3'- gUG-GGUCGGUaGcCaGUGCGGGACGA- -5'
18320 3' -60.4 NC_004681.1 + 48563 0.75 0.141033
Target:  5'- gCACCCAGCCcugcugcaucGUgGGcCACGCCCUcGCa -3'
miRNA:   3'- -GUGGGUCGG----------UAgCCaGUGCGGGA-CGa -5'
18320 3' -60.4 NC_004681.1 + 47621 1.06 0.000714
Target:  5'- gCACCCAGCCAUCGGUCACGCCCUGCUu -3'
miRNA:   3'- -GUGGGUCGGUAGCCAGUGCGGGACGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.