Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18320 | 5' | -55 | NC_004681.1 | + | 21294 | 0.66 | 0.815846 |
Target: 5'- cAGAGUGGCGACgcUGUccauucGGCCGUUa -3' miRNA: 3'- -UCUCGUCGCUGa-ACAuca---CCGGCAGc -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 61095 | 0.66 | 0.814008 |
Target: 5'- cGAGCuGCGGuucacccaagGUGGgcaGGCCGUCGc -3' miRNA: 3'- uCUCGuCGCUgaa-------CAUCa--CCGGCAGC- -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 14487 | 0.66 | 0.797144 |
Target: 5'- cGAGCAG-GGCgcgcUGGUGGCCGg-- -3' miRNA: 3'- uCUCGUCgCUGaac-AUCACCGGCagc -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 61291 | 0.66 | 0.777775 |
Target: 5'- uGGuGCAGCGGaggaaugUGgcGUcGCCGUCGa -3' miRNA: 3'- -UCuCGUCGCUga-----ACauCAcCGGCAGC- -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 15912 | 0.67 | 0.726988 |
Target: 5'- cGAGCcacuguGCGACgUUGcGGaGGCCGUCa -3' miRNA: 3'- uCUCGu-----CGCUG-AACaUCaCCGGCAGc -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 27677 | 0.68 | 0.69533 |
Target: 5'- -cGGCGGCGGCggugGUGGUGGUgG-CGc -3' miRNA: 3'- ucUCGUCGCUGaa--CAUCACCGgCaGC- -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 48767 | 0.68 | 0.69533 |
Target: 5'- aGGA-CGGCGGCUacaccUGgAGUgaGGCCGUCGa -3' miRNA: 3'- -UCUcGUCGCUGA-----ACaUCA--CCGGCAGC- -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 2941 | 0.68 | 0.69533 |
Target: 5'- cGGGGaCGGUGACcgUGUAGcGGCgGUCc -3' miRNA: 3'- -UCUC-GUCGCUGa-ACAUCaCCGgCAGc -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 41155 | 0.7 | 0.58749 |
Target: 5'- -cGGCGGCGGCgccgaagAG-GGCCGUCGc -3' miRNA: 3'- ucUCGUCGCUGaaca---UCaCCGGCAGC- -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 22970 | 0.7 | 0.576758 |
Target: 5'- uGGAGCucuuGGUGACcuugGUGGUGGCgcUGUCGa -3' miRNA: 3'- -UCUCG----UCGCUGaa--CAUCACCG--GCAGC- -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 33467 | 0.7 | 0.576758 |
Target: 5'- cGGGcCAGUGGCcgUGgcugauccUGGUGGCCGUCu -3' miRNA: 3'- uCUC-GUCGCUGa-AC--------AUCACCGGCAGc -5' |
|||||||
18320 | 5' | -55 | NC_004681.1 | + | 47586 | 1.08 | 0.00183 |
Target: 5'- uAGAGCAGCGACUUGUAGUGGCCGUCGc -3' miRNA: 3'- -UCUCGUCGCUGAACAUCACCGGCAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home