Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18321 | 5' | -58 | NC_004681.1 | + | 10295 | 0.69 | 0.454398 |
Target: 5'- uGUGGccggUGCUCCA-CUCGGAGccGGGGAg -3' miRNA: 3'- -CACCca--ACGAGGUgGAGCCUC--UCCUU- -5' |
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18321 | 5' | -58 | NC_004681.1 | + | 14709 | 0.73 | 0.234684 |
Target: 5'- gGUGGGUUaCaCCGCCUCGGAGuugcAGGAAg -3' miRNA: 3'- -CACCCAAcGaGGUGGAGCCUC----UCCUU- -5' |
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18321 | 5' | -58 | NC_004681.1 | + | 16383 | 0.67 | 0.534808 |
Target: 5'- aGUGGGUUGCcucggCCACCUCcaAGGGuGAc -3' miRNA: 3'- -CACCCAACGa----GGUGGAGccUCUC-CUu -5' |
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18321 | 5' | -58 | NC_004681.1 | + | 31833 | 0.68 | 0.48384 |
Target: 5'- -cGGGUcgGCgccugCCACUUCGGAcAGGAGc -3' miRNA: 3'- caCCCAa-CGa----GGUGGAGCCUcUCCUU- -5' |
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18321 | 5' | -58 | NC_004681.1 | + | 51671 | 1.05 | 0.001277 |
Target: 5'- gGUGGGUUGCUCCACCUCGGAGAGGAAc -3' miRNA: 3'- -CACCCAACGAGGUGGAGCCUCUCCUU- -5' |
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18321 | 5' | -58 | NC_004681.1 | + | 61691 | 0.69 | 0.41671 |
Target: 5'- aGUGGGUgcagucaaugUGCUucCUugUUCGGAGGGGGc -3' miRNA: 3'- -CACCCA----------ACGA--GGugGAGCCUCUCCUu -5' |
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18321 | 5' | -58 | NC_004681.1 | + | 64550 | 0.68 | 0.477876 |
Target: 5'- -gGGGUggGaCUUCAuguaucggucccagcCCUCGGAGAGGAGc -3' miRNA: 3'- caCCCAa-C-GAGGU---------------GGAGCCUCUCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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