Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18322 | 3' | -58.4 | NC_004681.1 | + | 27456 | 0.66 | 0.618413 |
Target: 5'- uUCCGCCguugaGGGucAGCUCgaaugGGGGCGguguGACCu -3' miRNA: 3'- -AGGCGGg----CCU--UCGAG-----UCCCGU----UUGGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 49647 | 0.66 | 0.597217 |
Target: 5'- cCUGCCCGcGGgggaaGGC-CAGGGCGAugUc -3' miRNA: 3'- aGGCGGGC-CU-----UCGaGUCCCGUUugGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 6784 | 0.66 | 0.585602 |
Target: 5'- uUCCGCUCGGccagugcGAGCUgCAcGGCGAGCa- -3' miRNA: 3'- -AGGCGGGCC-------UUCGA-GUcCCGUUUGgu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 25817 | 0.66 | 0.639654 |
Target: 5'- aCCGCCaccgCGGu-GCUCAuGGCAAuCCAg -3' miRNA: 3'- aGGCGG----GCCuuCGAGUcCCGUUuGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 30337 | 0.66 | 0.639654 |
Target: 5'- uUCgGCUCGGggGCUUucgcauuGGGgGAACa- -3' miRNA: 3'- -AGgCGGGCCuuCGAGu------CCCgUUUGgu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 17597 | 0.66 | 0.618413 |
Target: 5'- gCCGUgguaUCGGcGGCUCGGGcGCGGACg- -3' miRNA: 3'- aGGCG----GGCCuUCGAGUCC-CGUUUGgu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 62443 | 0.66 | 0.607805 |
Target: 5'- gCCGCCCaGGAaacccgaauGGCcgaGGGGCAcGACCc -3' miRNA: 3'- aGGCGGG-CCU---------UCGag-UCCCGU-UUGGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 3867 | 0.66 | 0.596159 |
Target: 5'- cUCCGaaCCGGuaugGGCUCAGGuGCGcgcgugcAACCAc -3' miRNA: 3'- -AGGCg-GGCCu---UCGAGUCC-CGU-------UUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 19017 | 0.66 | 0.629032 |
Target: 5'- cCCGCgaCGGGAGCcUGGGGaCcGGCCAg -3' miRNA: 3'- aGGCGg-GCCUUCGaGUCCC-GuUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 59463 | 0.66 | 0.639654 |
Target: 5'- -gCGCaUCGGGAGCagAGGGUggGgCCAg -3' miRNA: 3'- agGCG-GGCCUUCGagUCCCGuuU-GGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 16605 | 0.66 | 0.639654 |
Target: 5'- cCCGCCaucuGGGAGUUCcaguugccGGGGCGcggcGCCGa -3' miRNA: 3'- aGGCGGg---CCUUCGAG--------UCCCGUu---UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 63279 | 0.66 | 0.618413 |
Target: 5'- cUCCGCCgCGGAca-UCAGGGUgucGAGCgGg -3' miRNA: 3'- -AGGCGG-GCCUucgAGUCCCG---UUUGgU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 3245 | 0.66 | 0.618413 |
Target: 5'- gUCCaucagGCCCuGGAGG---AGGGCGAGCCGc -3' miRNA: 3'- -AGG-----CGGG-CCUUCgagUCCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 36889 | 0.66 | 0.607805 |
Target: 5'- aCUGCCUaGucAGCggGGGGCGGGCCAg -3' miRNA: 3'- aGGCGGGcCu-UCGagUCCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 28507 | 0.67 | 0.555216 |
Target: 5'- cUCCGC--GGGAGC-CGGGGUGAccGCCAg -3' miRNA: 3'- -AGGCGggCCUUCGaGUCCCGUU--UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 52977 | 0.67 | 0.555216 |
Target: 5'- gUCGCCgCGGcucGGGCaCGcGGGCAGGCCGa -3' miRNA: 3'- aGGCGG-GCC---UUCGaGU-CCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 62676 | 0.67 | 0.53453 |
Target: 5'- cUCCGCCuCGGcgcGCUCccGGCGuuCCAu -3' miRNA: 3'- -AGGCGG-GCCuu-CGAGucCCGUuuGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 21950 | 0.67 | 0.524288 |
Target: 5'- -aUGCCCG--AGCgaAGGGCGAACCAu -3' miRNA: 3'- agGCGGGCcuUCGagUCCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 48780 | 0.67 | 0.575081 |
Target: 5'- cUCgGCCCauGGGAGCUggcccgcCAGGGUucccGCCAg -3' miRNA: 3'- -AGgCGGG--CCUUCGA-------GUCCCGuu--UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 34746 | 0.68 | 0.514122 |
Target: 5'- gCCGCCCcuugucGAAGUagGGGGCAAgaagcuccGCCAa -3' miRNA: 3'- aGGCGGGc-----CUUCGagUCCCGUU--------UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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