Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18322 | 3' | -58.4 | NC_004681.1 | + | 52936 | 1.09 | 0.000706 |
Target: 5'- uUCCGCCCGGAAGCUCAGGGCAAACCAg -3' miRNA: 3'- -AGGCGGGCCUUCGAGUCCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 63934 | 0.75 | 0.17868 |
Target: 5'- cCCGCCCGGAuuuGaacCGGGGaCGAACCAa -3' miRNA: 3'- aGGCGGGCCUu--Cga-GUCCC-GUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 28483 | 0.72 | 0.288731 |
Target: 5'- cCCGCCCGGGgcugGGCUCAcacucaccccGGGCAcccCCGc -3' miRNA: 3'- aGGCGGGCCU----UCGAGU----------CCCGUuu-GGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 49335 | 0.72 | 0.310324 |
Target: 5'- gUCCGCCaCGGcGGCgccgCGGGcGCuGACCAc -3' miRNA: 3'- -AGGCGG-GCCuUCGa---GUCC-CGuUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 22294 | 0.7 | 0.373794 |
Target: 5'- cCUGCCCGucauGGCgCAGGGUGAGCCc -3' miRNA: 3'- aGGCGGGCcu--UCGaGUCCCGUUUGGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 67367 | 0.7 | 0.390979 |
Target: 5'- -gCGCCUgguucaaguacgGGGAcaagaacgucGCUCAGGGCAAGCCc -3' miRNA: 3'- agGCGGG------------CCUU----------CGAGUCCCGUUUGGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 48039 | 0.7 | 0.399762 |
Target: 5'- cCCGCCUGGggGCUCuGGau--GCCu -3' miRNA: 3'- aGGCGGGCCuuCGAGuCCcguuUGGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 40136 | 0.69 | 0.436125 |
Target: 5'- aCCGCCCGGGA---CAGG-CAGGCCGc -3' miRNA: 3'- aGGCGGGCCUUcgaGUCCcGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 44796 | 0.69 | 0.44551 |
Target: 5'- aCCGCCCuGGAGGU---GGGCAaGACCu -3' miRNA: 3'- aGGCGGG-CCUUCGaguCCCGU-UUGGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 14443 | 0.69 | 0.44551 |
Target: 5'- gCCGCCCGcGAGGC--GGaGGCGAacGCCGc -3' miRNA: 3'- aGGCGGGC-CUUCGagUC-CCGUU--UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 34746 | 0.68 | 0.514122 |
Target: 5'- gCCGCCCcuugucGAAGUagGGGGCAAgaagcuccGCCAa -3' miRNA: 3'- aGGCGGGc-----CUUCGagUCCCGUU--------UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 21950 | 0.67 | 0.524288 |
Target: 5'- -aUGCCCG--AGCgaAGGGCGAACCAu -3' miRNA: 3'- agGCGGGCcuUCGagUCCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 62676 | 0.67 | 0.53453 |
Target: 5'- cUCCGCCuCGGcgcGCUCccGGCGuuCCAu -3' miRNA: 3'- -AGGCGG-GCCuu-CGAGucCCGUuuGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 52977 | 0.67 | 0.555216 |
Target: 5'- gUCGCCgCGGcucGGGCaCGcGGGCAGGCCGa -3' miRNA: 3'- aGGCGG-GCC---UUCGaGU-CCCGUUUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 28507 | 0.67 | 0.555216 |
Target: 5'- cUCCGC--GGGAGC-CGGGGUGAccGCCAg -3' miRNA: 3'- -AGGCGggCCUUCGaGUCCCGUU--UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 48780 | 0.67 | 0.575081 |
Target: 5'- cUCgGCCCauGGGAGCUggcccgcCAGGGUucccGCCAg -3' miRNA: 3'- -AGgCGGG--CCUUCGA-------GUCCCGuu--UGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 6784 | 0.66 | 0.585602 |
Target: 5'- uUCCGCUCGGccagugcGAGCUgCAcGGCGAGCa- -3' miRNA: 3'- -AGGCGGGCC-------UUCGA-GUcCCGUUUGgu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 3867 | 0.66 | 0.596159 |
Target: 5'- cUCCGaaCCGGuaugGGCUCAGGuGCGcgcgugcAACCAc -3' miRNA: 3'- -AGGCg-GGCCu---UCGAGUCC-CGU-------UUGGU- -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 49647 | 0.66 | 0.597217 |
Target: 5'- cCUGCCCGcGGgggaaGGC-CAGGGCGAugUc -3' miRNA: 3'- aGGCGGGC-CU-----UCGaGUCCCGUUugGu -5' |
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18322 | 3' | -58.4 | NC_004681.1 | + | 62443 | 0.66 | 0.607805 |
Target: 5'- gCCGCCCaGGAaacccgaauGGCcgaGGGGCAcGACCc -3' miRNA: 3'- aGGCGGG-CCU---------UCGag-UCCCGU-UUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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