miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18322 5' -56.3 NC_004681.1 + 65320 0.66 0.7605
Target:  5'- --cCGUCcUCCgUCgACUCCC-GGCGa -3'
miRNA:   3'- guaGCAGaAGGaAGgUGAGGGgCCGC- -5'
18322 5' -56.3 NC_004681.1 + 16778 0.66 0.740473
Target:  5'- --aCGUCggugCCUggCgGCaUCCCCGGCa -3'
miRNA:   3'- guaGCAGaa--GGAa-GgUG-AGGGGCCGc -5'
18322 5' -56.3 NC_004681.1 + 22657 0.67 0.688801
Target:  5'- gAUCGcCUaCg-UCCGCaUCCCCGGCa -3'
miRNA:   3'- gUAGCaGAaGgaAGGUG-AGGGGCCGc -5'
18322 5' -56.3 NC_004681.1 + 28877 0.68 0.625214
Target:  5'- uCAUCGggcUCUUCCUggUACaUCCUCGGUGg -3'
miRNA:   3'- -GUAGC---AGAAGGAagGUG-AGGGGCCGC- -5'
18322 5' -56.3 NC_004681.1 + 24955 0.68 0.625214
Target:  5'- cCGUCaUCaUCCagUUCAC-CCCCGGCGa -3'
miRNA:   3'- -GUAGcAGaAGGa-AGGUGaGGGGCCGC- -5'
18322 5' -56.3 NC_004681.1 + 20147 0.69 0.593372
Target:  5'- gGUCGUCaugCUcaCCACgcugCCCCGGCu -3'
miRNA:   3'- gUAGCAGaa-GGaaGGUGa---GGGGCCGc -5'
18322 5' -56.3 NC_004681.1 + 8284 0.69 0.572283
Target:  5'- --gCGagggCUUCCUUCUuCUCCgCGGCGg -3'
miRNA:   3'- guaGCa---GAAGGAAGGuGAGGgGCCGC- -5'
18322 5' -56.3 NC_004681.1 + 43354 0.7 0.520481
Target:  5'- aCAUCuUCUUCCggggacgUCAUaUCCCCGGCGc -3'
miRNA:   3'- -GUAGcAGAAGGaa-----GGUG-AGGGGCCGC- -5'
18322 5' -56.3 NC_004681.1 + 40238 0.71 0.46093
Target:  5'- gCGUCG-CggCCUgCCugUCCCgGGCGg -3'
miRNA:   3'- -GUAGCaGaaGGAaGGugAGGGgCCGC- -5'
18322 5' -56.3 NC_004681.1 + 62399 0.73 0.378941
Target:  5'- aGUCGgugcgCUUCCaUCCcgcgucgaACUCCUCGGCGg -3'
miRNA:   3'- gUAGCa----GAAGGaAGG--------UGAGGGGCCGC- -5'
18322 5' -56.3 NC_004681.1 + 12199 0.74 0.314743
Target:  5'- gCGUCGggCUUCCccgcgcgCCGCaUCCCCGGUGg -3'
miRNA:   3'- -GUAGCa-GAAGGaa-----GGUG-AGGGGCCGC- -5'
18322 5' -56.3 NC_004681.1 + 52900 1.09 0.001384
Target:  5'- uCAUCGUCUUCCUUCCACUCCCCGGCGa -3'
miRNA:   3'- -GUAGCAGAAGGAAGGUGAGGGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.