miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18323 3' -55.5 NC_004681.1 + 22547 0.66 0.767453
Target:  5'- cAGUACgacgaGGCCaCCCAgaaGAUGgucUGGGUCGCc -3'
miRNA:   3'- -UCAUG-----UCGG-GGGUa--CUAC---AUCCGGUG- -5'
18323 3' -55.5 NC_004681.1 + 52127 0.66 0.767453
Target:  5'- --cGCAGCCUCaa-GGUGgcGGCCAa -3'
miRNA:   3'- ucaUGUCGGGGguaCUACauCCGGUg -5'
18323 3' -55.5 NC_004681.1 + 2129 0.66 0.747054
Target:  5'- cGGUGCGGCCgCCCuccacGAccaccuGGCCGCg -3'
miRNA:   3'- -UCAUGUCGG-GGGua---CUacau--CCGGUG- -5'
18323 3' -55.5 NC_004681.1 + 15885 0.66 0.747054
Target:  5'- cGU-CAGCCaugCCCuUGAUGUAGGgCAg -3'
miRNA:   3'- uCAuGUCGG---GGGuACUACAUCCgGUg -5'
18323 3' -55.5 NC_004681.1 + 74376 0.66 0.736676
Target:  5'- --gACAGCCUCCGUGA----GGCaCACa -3'
miRNA:   3'- ucaUGUCGGGGGUACUacauCCG-GUG- -5'
18323 3' -55.5 NC_004681.1 + 17907 0.67 0.715621
Target:  5'- --cGCGGCCgCCGcguUGAUGUcGGCCuGCg -3'
miRNA:   3'- ucaUGUCGGgGGU---ACUACAuCCGG-UG- -5'
18323 3' -55.5 NC_004681.1 + 58760 0.67 0.701756
Target:  5'- cGUGgAGaCCCCCgAUGGUGUcacgcgcaccgucgAGGCgCGCg -3'
miRNA:   3'- uCAUgUC-GGGGG-UACUACA--------------UCCG-GUG- -5'
18323 3' -55.5 NC_004681.1 + 65570 0.67 0.672626
Target:  5'- --gACAGCCCCCuuacauucugaGUGGUGcuauGGCgGCg -3'
miRNA:   3'- ucaUGUCGGGGG-----------UACUACau--CCGgUG- -5'
18323 3' -55.5 NC_004681.1 + 69128 0.67 0.661757
Target:  5'- aGGUGCGGCCC----GGUGUcAGGUCGCa -3'
miRNA:   3'- -UCAUGUCGGGgguaCUACA-UCCGGUG- -5'
18323 3' -55.5 NC_004681.1 + 28398 0.68 0.65086
Target:  5'- --gGC-GUCCCCAUGGUGaGGGUCAg -3'
miRNA:   3'- ucaUGuCGGGGGUACUACaUCCGGUg -5'
18323 3' -55.5 NC_004681.1 + 44835 0.68 0.641038
Target:  5'- --gGCGGCCCCCGUGucggcuucuucuccAUGUuccccuacgucacgaAGGUCACc -3'
miRNA:   3'- ucaUGUCGGGGGUAC--------------UACA---------------UCCGGUG- -5'
18323 3' -55.5 NC_004681.1 + 49880 0.68 0.639946
Target:  5'- --gGCAGCCCU--UGGUGccguGGCCGCa -3'
miRNA:   3'- ucaUGUCGGGGguACUACau--CCGGUG- -5'
18323 3' -55.5 NC_004681.1 + 44924 0.68 0.629025
Target:  5'- aAGaGCucGCCCCCAcGcgGUGGaGCCGCc -3'
miRNA:   3'- -UCaUGu-CGGGGGUaCuaCAUC-CGGUG- -5'
18323 3' -55.5 NC_004681.1 + 22873 0.69 0.596317
Target:  5'- --gACAGgCCCCGUGGUG-GGGUCGu -3'
miRNA:   3'- ucaUGUCgGGGGUACUACaUCCGGUg -5'
18323 3' -55.5 NC_004681.1 + 3016 0.7 0.479237
Target:  5'- cGGUGCcgucgcccagccaGGCCCCCAgGAUGUagGGGUCGa -3'
miRNA:   3'- -UCAUG-------------UCGGGGGUaCUACA--UCCGGUg -5'
18323 3' -55.5 NC_004681.1 + 22697 0.72 0.394054
Target:  5'- gAGUGgcGCCCCC-UGGUGUGGGCaCAg -3'
miRNA:   3'- -UCAUguCGGGGGuACUACAUCCG-GUg -5'
18323 3' -55.5 NC_004681.1 + 64701 0.72 0.385109
Target:  5'- --cGCAGgCCCCAUGAcgcugGUGGGuCCGCc -3'
miRNA:   3'- ucaUGUCgGGGGUACUa----CAUCC-GGUG- -5'
18323 3' -55.5 NC_004681.1 + 61869 0.72 0.3763
Target:  5'- cGUAgAGCUCCUGgccGAUGgcGGCCGCg -3'
miRNA:   3'- uCAUgUCGGGGGUa--CUACauCCGGUG- -5'
18323 3' -55.5 NC_004681.1 + 53971 1.09 0.001245
Target:  5'- cAGUACAGCCCCCAUGAUGUAGGCCACc -3'
miRNA:   3'- -UCAUGUCGGGGGUACUACAUCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.