miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18323 5' -52.7 NC_004681.1 + 48669 0.66 0.880678
Target:  5'- gGCGUGGCCCaCgAUGcAGcAGGGCu-- -3'
miRNA:   3'- -CGUACCGGGaGgUACuUC-UUCCGuua -5'
18323 5' -52.7 NC_004681.1 + 23791 0.66 0.880678
Target:  5'- uCcgGGCCaCUCUAUGuccgcGGAGGCGGg -3'
miRNA:   3'- cGuaCCGG-GAGGUACuu---CUUCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 43895 0.66 0.864729
Target:  5'- gGCGcGGaCCUCgugGAAGGAGGCAAa -3'
miRNA:   3'- -CGUaCCgGGAGguaCUUCUUCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 33760 0.66 0.864729
Target:  5'- cGCGgagguucGCCaccugCUCCGUGAGGAAGGUGAc -3'
miRNA:   3'- -CGUac-----CGG-----GAGGUACUUCUUCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 18470 0.66 0.856375
Target:  5'- cGCcUGGCCUgCCAUGucGAuGGCGc- -3'
miRNA:   3'- -CGuACCGGGaGGUACuuCUuCCGUua -5'
18323 5' -52.7 NC_004681.1 + 62504 0.67 0.838949
Target:  5'- uCAUGGCCCaggCCAUGGGcacccuGGCAGc -3'
miRNA:   3'- cGUACCGGGa--GGUACUUcuu---CCGUUa -5'
18323 5' -52.7 NC_004681.1 + 59278 0.67 0.829895
Target:  5'- ---aGGCCgUCCGUGAcauAGguGGCGAc -3'
miRNA:   3'- cguaCCGGgAGGUACU---UCuuCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 20233 0.67 0.820626
Target:  5'- aGCAugacgaccUGGCCCUCCA-GGAGggGucCGAa -3'
miRNA:   3'- -CGU--------ACCGGGAGGUaCUUCuuCc-GUUa -5'
18323 5' -52.7 NC_004681.1 + 74381 0.67 0.819687
Target:  5'- aCGUGGacagCCUCCGUGAGGcAcacaagacacuccGGGCAAUg -3'
miRNA:   3'- cGUACCg---GGAGGUACUUC-U-------------UCCGUUA- -5'
18323 5' -52.7 NC_004681.1 + 3238 0.67 0.811152
Target:  5'- ---aGGCCCUg---GAGGAGGGCGAg -3'
miRNA:   3'- cguaCCGGGAgguaCUUCUUCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 50375 0.67 0.801483
Target:  5'- aCGUGGCCCUUCuUGcGGuGGGCGc- -3'
miRNA:   3'- cGUACCGGGAGGuACuUCuUCCGUua -5'
18323 5' -52.7 NC_004681.1 + 68743 0.68 0.771426
Target:  5'- ---aGGgCCUCCAUGAGGcAGGgGAa -3'
miRNA:   3'- cguaCCgGGAGGUACUUCuUCCgUUa -5'
18323 5' -52.7 NC_004681.1 + 21293 0.68 0.761094
Target:  5'- ---aGGgCCUCCuguucccgcUGAAGAAGGCGAc -3'
miRNA:   3'- cguaCCgGGAGGu--------ACUUCUUCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 1263 0.69 0.740033
Target:  5'- uCGUGGCCCccgaCAUGucGGAGGGCGc- -3'
miRNA:   3'- cGUACCGGGag--GUACu-UCUUCCGUua -5'
18323 5' -52.7 NC_004681.1 + 9546 0.69 0.718522
Target:  5'- ---cGGCCUUCCAgcugauccagcUGAAGAAGGguGc -3'
miRNA:   3'- cguaCCGGGAGGU-----------ACUUCUUCCguUa -5'
18323 5' -52.7 NC_004681.1 + 16500 0.69 0.707628
Target:  5'- cGCAUGGCCUggucacCCuUGGAGGuggccgAGGCAAc -3'
miRNA:   3'- -CGUACCGGGa-----GGuACUUCU------UCCGUUa -5'
18323 5' -52.7 NC_004681.1 + 48132 0.69 0.707628
Target:  5'- aGCAgaUGGCCCgcgCCcuucacuacGUGAAGAAGgGCAc- -3'
miRNA:   3'- -CGU--ACCGGGa--GG---------UACUUCUUC-CGUua -5'
18323 5' -52.7 NC_004681.1 + 16290 0.7 0.652245
Target:  5'- uGCuUGGCCUgcucugCCAUGAAGAuGGCc-- -3'
miRNA:   3'- -CGuACCGGGa-----GGUACUUCUuCCGuua -5'
18323 5' -52.7 NC_004681.1 + 59533 0.71 0.607522
Target:  5'- ---gGuGCCCUUCAUGGuuuGGAGGGCGGUg -3'
miRNA:   3'- cguaC-CGGGAGGUACU---UCUUCCGUUA- -5'
18323 5' -52.7 NC_004681.1 + 62084 0.71 0.607522
Target:  5'- gGCAUGGCggCCUCCAUGGGc--GGCAu- -3'
miRNA:   3'- -CGUACCG--GGAGGUACUUcuuCCGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.