Results 1 - 20 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 48669 | 0.66 | 0.880678 |
Target: 5'- gGCGUGGCCCaCgAUGcAGcAGGGCu-- -3' miRNA: 3'- -CGUACCGGGaGgUACuUC-UUCCGuua -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 23791 | 0.66 | 0.880678 |
Target: 5'- uCcgGGCCaCUCUAUGuccgcGGAGGCGGg -3' miRNA: 3'- cGuaCCGG-GAGGUACuu---CUUCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 18470 | 0.66 | 0.856375 |
Target: 5'- cGCcUGGCCUgCCAUGucGAuGGCGc- -3' miRNA: 3'- -CGuACCGGGaGGUACuuCUuCCGUua -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 43895 | 0.66 | 0.864729 |
Target: 5'- gGCGcGGaCCUCgugGAAGGAGGCAAa -3' miRNA: 3'- -CGUaCCgGGAGguaCUUCUUCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 33760 | 0.66 | 0.864729 |
Target: 5'- cGCGgagguucGCCaccugCUCCGUGAGGAAGGUGAc -3' miRNA: 3'- -CGUac-----CGG-----GAGGUACUUCUUCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 3238 | 0.67 | 0.811152 |
Target: 5'- ---aGGCCCUg---GAGGAGGGCGAg -3' miRNA: 3'- cguaCCGGGAgguaCUUCUUCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 74381 | 0.67 | 0.819687 |
Target: 5'- aCGUGGacagCCUCCGUGAGGcAcacaagacacuccGGGCAAUg -3' miRNA: 3'- cGUACCg---GGAGGUACUUC-U-------------UCCGUUA- -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 20233 | 0.67 | 0.820626 |
Target: 5'- aGCAugacgaccUGGCCCUCCA-GGAGggGucCGAa -3' miRNA: 3'- -CGU--------ACCGGGAGGUaCUUCuuCc-GUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 59278 | 0.67 | 0.829895 |
Target: 5'- ---aGGCCgUCCGUGAcauAGguGGCGAc -3' miRNA: 3'- cguaCCGGgAGGUACU---UCuuCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 62504 | 0.67 | 0.838949 |
Target: 5'- uCAUGGCCCaggCCAUGGGcacccuGGCAGc -3' miRNA: 3'- cGUACCGGGa--GGUACUUcuu---CCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 50375 | 0.67 | 0.801483 |
Target: 5'- aCGUGGCCCUUCuUGcGGuGGGCGc- -3' miRNA: 3'- cGUACCGGGAGGuACuUCuUCCGUua -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 21293 | 0.68 | 0.761094 |
Target: 5'- ---aGGgCCUCCuguucccgcUGAAGAAGGCGAc -3' miRNA: 3'- cguaCCgGGAGGu--------ACUUCUUCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 68743 | 0.68 | 0.771426 |
Target: 5'- ---aGGgCCUCCAUGAGGcAGGgGAa -3' miRNA: 3'- cguaCCgGGAGGUACUUCuUCCgUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 16500 | 0.69 | 0.707628 |
Target: 5'- cGCAUGGCCUggucacCCuUGGAGGuggccgAGGCAAc -3' miRNA: 3'- -CGUACCGGGa-----GGuACUUCU------UCCGUUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 1263 | 0.69 | 0.740033 |
Target: 5'- uCGUGGCCCccgaCAUGucGGAGGGCGc- -3' miRNA: 3'- cGUACCGGGag--GUACu-UCUUCCGUua -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 9546 | 0.69 | 0.718522 |
Target: 5'- ---cGGCCUUCCAgcugauccagcUGAAGAAGGguGc -3' miRNA: 3'- cguaCCGGGAGGU-----------ACUUCUUCCguUa -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 48132 | 0.69 | 0.707628 |
Target: 5'- aGCAgaUGGCCCgcgCCcuucacuacGUGAAGAAGgGCAc- -3' miRNA: 3'- -CGU--ACCGGGa--GG---------UACUUCUUC-CGUua -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 16290 | 0.7 | 0.652245 |
Target: 5'- uGCuUGGCCUgcucugCCAUGAAGAuGGCc-- -3' miRNA: 3'- -CGuACCGGGa-----GGUACUUCUuCCGuua -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 59533 | 0.71 | 0.607522 |
Target: 5'- ---gGuGCCCUUCAUGGuuuGGAGGGCGGUg -3' miRNA: 3'- cguaC-CGGGAGGUACU---UCUUCCGUUA- -5' |
|||||||
18323 | 5' | -52.7 | NC_004681.1 | + | 62084 | 0.71 | 0.607522 |
Target: 5'- gGCAUGGCggCCUCCAUGGGc--GGCAu- -3' miRNA: 3'- -CGUACCG--GGAGGUACUUcuuCCGUua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home