miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18324 5' -55 NC_004681.1 + 38903 0.67 0.736387
Target:  5'- aGCCUGCUgGCGUGGGUcaauccauGGCCAg -3'
miRNA:   3'- -CGGGUGAaCGCGUCCAugaau---CCGGU- -5'
18324 5' -55 NC_004681.1 + 49598 0.68 0.696124
Target:  5'- gGCCUGgUUGCGCAGGaccccgGCgacUGGGCa- -3'
miRNA:   3'- -CGGGUgAACGCGUCCa-----UGa--AUCCGgu -5'
18324 5' -55 NC_004681.1 + 50371 0.68 0.674541
Target:  5'- gGCCCuuCUUGCGguGG-GCgcGGGaCCAg -3'
miRNA:   3'- -CGGGu-GAACGCguCCaUGaaUCC-GGU- -5'
18324 5' -55 NC_004681.1 + 64360 0.68 0.663685
Target:  5'- gGCCCGCggacaagGCGUGGGcgACaauGGCCAc -3'
miRNA:   3'- -CGGGUGaa-----CGCGUCCa-UGaauCCGGU- -5'
18324 5' -55 NC_004681.1 + 58752 0.68 0.6528
Target:  5'- gGCCCGCg-GCGCAGGcgGCcguGGCgCAg -3'
miRNA:   3'- -CGGGUGaaCGCGUCCa-UGaauCCG-GU- -5'
18324 5' -55 NC_004681.1 + 4174 0.69 0.620073
Target:  5'- aCCCA---GCGCGGGguugGCgugGGGCCAg -3'
miRNA:   3'- cGGGUgaaCGCGUCCa---UGaa-UCCGGU- -5'
18324 5' -55 NC_004681.1 + 45085 0.69 0.620073
Target:  5'- cGCCCACgaggccgaggaUGCaGCAGGgcucaUUGGGCCu -3'
miRNA:   3'- -CGGGUGa----------ACG-CGUCCaug--AAUCCGGu -5'
18324 5' -55 NC_004681.1 + 6672 0.71 0.472104
Target:  5'- cGCCCuugACggcGCGCAGGUGCUUcGGUg- -3'
miRNA:   3'- -CGGG---UGaa-CGCGUCCAUGAAuCCGgu -5'
18324 5' -55 NC_004681.1 + 39406 0.74 0.360779
Target:  5'- gGCgCCGCgcGCGCAGGUAUUUGucgaugguGGCCGc -3'
miRNA:   3'- -CG-GGUGaaCGCGUCCAUGAAU--------CCGGU- -5'
18324 5' -55 NC_004681.1 + 3161 0.74 0.320104
Target:  5'- uCCCAuCUUGCGCAGG-ACUgccaccAGGCCc -3'
miRNA:   3'- cGGGU-GAACGCGUCCaUGAa-----UCCGGu -5'
18324 5' -55 NC_004681.1 + 58138 0.77 0.236815
Target:  5'- gGCCUACgaGCaGCAGGUgACUgAGGCCAa -3'
miRNA:   3'- -CGGGUGaaCG-CGUCCA-UGAaUCCGGU- -5'
18324 5' -55 NC_004681.1 + 54445 1.1 0.001151
Target:  5'- uGCCCACUUGCGCAGGUACUUAGGCCAc -3'
miRNA:   3'- -CGGGUGAACGCGUCCAUGAAUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.