Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18324 | 5' | -55 | NC_004681.1 | + | 54445 | 1.1 | 0.001151 |
Target: 5'- uGCCCACUUGCGCAGGUACUUAGGCCAc -3' miRNA: 3'- -CGGGUGAACGCGUCCAUGAAUCCGGU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 58138 | 0.77 | 0.236815 |
Target: 5'- gGCCUACgaGCaGCAGGUgACUgAGGCCAa -3' miRNA: 3'- -CGGGUGaaCG-CGUCCA-UGAaUCCGGU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 3161 | 0.74 | 0.320104 |
Target: 5'- uCCCAuCUUGCGCAGG-ACUgccaccAGGCCc -3' miRNA: 3'- cGGGU-GAACGCGUCCaUGAa-----UCCGGu -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 39406 | 0.74 | 0.360779 |
Target: 5'- gGCgCCGCgcGCGCAGGUAUUUGucgaugguGGCCGc -3' miRNA: 3'- -CG-GGUGaaCGCGUCCAUGAAU--------CCGGU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 6672 | 0.71 | 0.472104 |
Target: 5'- cGCCCuugACggcGCGCAGGUGCUUcGGUg- -3' miRNA: 3'- -CGGG---UGaa-CGCGUCCAUGAAuCCGgu -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 45085 | 0.69 | 0.620073 |
Target: 5'- cGCCCACgaggccgaggaUGCaGCAGGgcucaUUGGGCCu -3' miRNA: 3'- -CGGGUGa----------ACG-CGUCCaug--AAUCCGGu -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 4174 | 0.69 | 0.620073 |
Target: 5'- aCCCA---GCGCGGGguugGCgugGGGCCAg -3' miRNA: 3'- cGGGUgaaCGCGUCCa---UGaa-UCCGGU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 58752 | 0.68 | 0.6528 |
Target: 5'- gGCCCGCg-GCGCAGGcgGCcguGGCgCAg -3' miRNA: 3'- -CGGGUGaaCGCGUCCa-UGaauCCG-GU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 64360 | 0.68 | 0.663685 |
Target: 5'- gGCCCGCggacaagGCGUGGGcgACaauGGCCAc -3' miRNA: 3'- -CGGGUGaa-----CGCGUCCa-UGaauCCGGU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 50371 | 0.68 | 0.674541 |
Target: 5'- gGCCCuuCUUGCGguGG-GCgcGGGaCCAg -3' miRNA: 3'- -CGGGu-GAACGCguCCaUGaaUCC-GGU- -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 49598 | 0.68 | 0.696124 |
Target: 5'- gGCCUGgUUGCGCAGGaccccgGCgacUGGGCa- -3' miRNA: 3'- -CGGGUgAACGCGUCCa-----UGa--AUCCGgu -5' |
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18324 | 5' | -55 | NC_004681.1 | + | 38903 | 0.67 | 0.736387 |
Target: 5'- aGCCUGCUgGCGUGGGUcaauccauGGCCAg -3' miRNA: 3'- -CGGGUGAaCGCGUCCAugaau---CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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