miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18325 3' -52.6 NC_004681.1 + 57879 0.66 0.930936
Target:  5'- cGUgGUCGCGGucUCCGG--UGGCGGUGu -3'
miRNA:   3'- aCAgCAGUGCU--GGGCUguACUGCUAC- -5'
18325 3' -52.6 NC_004681.1 + 15698 0.66 0.930936
Target:  5'- gGUCGUCuuguCGuCgCCGAacaGUGACGAg- -3'
miRNA:   3'- aCAGCAGu---GCuG-GGCUg--UACUGCUac -5'
18325 3' -52.6 NC_004681.1 + 23254 0.66 0.921881
Target:  5'- cGUCGUCuguuugaugaaggcaACGACCUGGCucagGAUGGc- -3'
miRNA:   3'- aCAGCAG---------------UGCUGGGCUGua--CUGCUac -5'
18325 3' -52.6 NC_004681.1 + 7138 0.66 0.919509
Target:  5'- gGUCGuUCAUGaACgCGACGgaGACGGUGc -3'
miRNA:   3'- aCAGC-AGUGC-UGgGCUGUa-CUGCUAC- -5'
18325 3' -52.6 NC_004681.1 + 2845 0.66 0.919509
Target:  5'- gGUCGUUgACGGCCC-ACAggUGAUGGUc -3'
miRNA:   3'- aCAGCAG-UGCUGGGcUGU--ACUGCUAc -5'
18325 3' -52.6 NC_004681.1 + 13110 0.66 0.919509
Target:  5'- gUGUCaGUCGCGGCCaCGuCGUccGCGGUGc -3'
miRNA:   3'- -ACAG-CAGUGCUGG-GCuGUAc-UGCUAC- -5'
18325 3' -52.6 NC_004681.1 + 27857 0.66 0.913394
Target:  5'- cGUCGUCAUuACCgCGAacgGUGGCGGa- -3'
miRNA:   3'- aCAGCAGUGcUGG-GCUg--UACUGCUac -5'
18325 3' -52.6 NC_004681.1 + 34246 0.67 0.893457
Target:  5'- uUGUCGggCACaucuACCCGGgGUGGCGGa- -3'
miRNA:   3'- -ACAGCa-GUGc---UGGGCUgUACUGCUac -5'
18325 3' -52.6 NC_004681.1 + 32359 0.67 0.893457
Target:  5'- -aUCGUCAcCGAUCCGGCccgcGGCGAg- -3'
miRNA:   3'- acAGCAGU-GCUGGGCUGua--CUGCUac -5'
18325 3' -52.6 NC_004681.1 + 32460 0.67 0.886293
Target:  5'- -cUCGcCGCGGgCCGGaucgGUGACGAUGu -3'
miRNA:   3'- acAGCaGUGCUgGGCUg---UACUGCUAC- -5'
18325 3' -52.6 NC_004681.1 + 26610 0.67 0.878875
Target:  5'- -cUCGUagcccaccCACGAUCCGGCAUGACc--- -3'
miRNA:   3'- acAGCA--------GUGCUGGGCUGUACUGcuac -5'
18325 3' -52.6 NC_004681.1 + 65367 0.68 0.838215
Target:  5'- cUGUCGcggACGACCacaaGGCA-GGCGAUGg -3'
miRNA:   3'- -ACAGCag-UGCUGGg---CUGUaCUGCUAC- -5'
18325 3' -52.6 NC_004681.1 + 21952 0.7 0.762747
Target:  5'- -uUCGUgGCGGCCUGGCGUccuuuGCGAUGc -3'
miRNA:   3'- acAGCAgUGCUGGGCUGUAc----UGCUAC- -5'
18325 3' -52.6 NC_004681.1 + 54867 1.09 0.00302
Target:  5'- gUGUCGUCACGACCCGACAUGACGAUGa -3'
miRNA:   3'- -ACAGCAGUGCUGGGCUGUACUGCUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.