Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18325 | 5' | -54.4 | NC_004681.1 | + | 66902 | 0.66 | 0.874251 |
Target: 5'- aGUCUGGcgagcuguccaUCGUCGUCGuuGACucuGUGGCg -3' miRNA: 3'- cCGGACC-----------AGUAGCAGCcuCUG---CAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 27270 | 0.66 | 0.873492 |
Target: 5'- cGCCUGugaucguGUCGaUGUUGGAGuaccCGUAGCc -3' miRNA: 3'- cCGGAC-------CAGUaGCAGCCUCu---GCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 47120 | 0.66 | 0.866557 |
Target: 5'- gGGUCgGGcUCGUCGgUGGGGAUGgucagGGCc -3' miRNA: 3'- -CCGGaCC-AGUAGCaGCCUCUGCa----UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 55005 | 0.66 | 0.858634 |
Target: 5'- cGGCCUgaagugccuucaGGUCG-CGccCGGGgaacuucuGACGUAGCg -3' miRNA: 3'- -CCGGA------------CCAGUaGCa-GCCU--------CUGCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 10266 | 0.66 | 0.858634 |
Target: 5'- aGGCC-GGUCGU-GUCGaAGAUGaGGCc -3' miRNA: 3'- -CCGGaCCAGUAgCAGCcUCUGCaUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 67660 | 0.66 | 0.858634 |
Target: 5'- aGGCgUGGagGgcugcUC-UCGGGGAUGUAGUg -3' miRNA: 3'- -CCGgACCagU-----AGcAGCCUCUGCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 22769 | 0.66 | 0.842124 |
Target: 5'- uGGgCUGGUCggUGcCGGggaugcGGACGUAGg -3' miRNA: 3'- -CCgGACCAGuaGCaGCC------UCUGCAUCg -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 10499 | 0.66 | 0.842124 |
Target: 5'- uGGCCUGGUCAgCcUUGGAcagcGAgGUgccAGCg -3' miRNA: 3'- -CCGGACCAGUaGcAGCCU----CUgCA---UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 44462 | 0.67 | 0.833553 |
Target: 5'- cGCCcguagGGUCAggUC-UCGGGGACGaAGUg -3' miRNA: 3'- cCGGa----CCAGU--AGcAGCCUCUGCaUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 51638 | 0.67 | 0.81582 |
Target: 5'- aGCUUGGgcgaugagcgCGUCGaccucuUCGGAgGugGUGGCg -3' miRNA: 3'- cCGGACCa---------GUAGC------AGCCU-CugCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 2023 | 0.68 | 0.78788 |
Target: 5'- cGGCCaGGUgGUCGU-GGAgGGCGgccGCa -3' miRNA: 3'- -CCGGaCCAgUAGCAgCCU-CUGCau-CG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 16433 | 0.68 | 0.778248 |
Target: 5'- uGGCUgaugacccaUGGUgGUC-UCGGcGugGUGGCg -3' miRNA: 3'- -CCGG---------ACCAgUAGcAGCCuCugCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 50845 | 0.68 | 0.767488 |
Target: 5'- cGGCUcggacuugcucgaUGGUCAUCccggguucgggGUCGGGGAguucguagaUGUAGCc -3' miRNA: 3'- -CCGG-------------ACCAGUAG-----------CAGCCUCU---------GCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 34007 | 0.68 | 0.758565 |
Target: 5'- aGGUgUGcccGUCGUCGUggucgacugCGGAGACGaGGCc -3' miRNA: 3'- -CCGgAC---CAGUAGCA---------GCCUCUGCaUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 57091 | 0.68 | 0.748536 |
Target: 5'- cGGCUacGGUCuuGUCGUagUGGucGGCGUAGCg -3' miRNA: 3'- -CCGGa-CCAG--UAGCA--GCCu-CUGCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 28402 | 0.68 | 0.748536 |
Target: 5'- uGGCCUggcGGUCAcccCGgcucccgCGGAGAUGgAGCu -3' miRNA: 3'- -CCGGA---CCAGUa--GCa------GCCUCUGCaUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 60682 | 0.69 | 0.728153 |
Target: 5'- cGGCCUcGUCGagcaccacguUCGUCGGccagcggcccgAGGCGUgcGGCg -3' miRNA: 3'- -CCGGAcCAGU----------AGCAGCC-----------UCUGCA--UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 51727 | 0.69 | 0.71782 |
Target: 5'- -aCCUGGUgGUCGUCGGcggccgccccGGCGcgGGCa -3' miRNA: 3'- ccGGACCAgUAGCAGCCu---------CUGCa-UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 27605 | 0.69 | 0.707408 |
Target: 5'- cGCCUgGGUCAcCcUCGGuGGCGcUGGCg -3' miRNA: 3'- cCGGA-CCAGUaGcAGCCuCUGC-AUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 50404 | 0.69 | 0.707408 |
Target: 5'- uGCCcaUGaGUucagCGUCGgccgCGGGGACGUGGCc -3' miRNA: 3'- cCGG--AC-CA----GUAGCa---GCCUCUGCAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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