miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18325 5' -54.4 NC_004681.1 + 54833 1.15 0.000911
Target:  5'- gGGCCUGGUCAUCGUCGGAGACGUAGCg -3'
miRNA:   3'- -CCGGACCAGUAGCAGCCUCUGCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 7711 0.81 0.156652
Target:  5'- cGGUCUGGcCAUCGUCGGcgaagucgcGGGCGUAGg -3'
miRNA:   3'- -CCGGACCaGUAGCAGCC---------UCUGCAUCg -5'
18325 5' -54.4 NC_004681.1 + 50151 0.79 0.214518
Target:  5'- aGGCa--GUCGauggCGUCGGAGACGUAGCc -3'
miRNA:   3'- -CCGgacCAGUa---GCAGCCUCUGCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 52328 0.76 0.35063
Target:  5'- cGGCCagguUGGUCAg-GUCGGGGAUGgcggGGCc -3'
miRNA:   3'- -CCGG----ACCAGUagCAGCCUCUGCa---UCG- -5'
18325 5' -54.4 NC_004681.1 + 20076 0.72 0.517335
Target:  5'- cGGCCUGGagGUUGUCGGcGAaggaGaAGCg -3'
miRNA:   3'- -CCGGACCagUAGCAGCCuCUg---CaUCG- -5'
18325 5' -54.4 NC_004681.1 + 2836 0.72 0.517335
Target:  5'- cGGCCcacaGGUgAUgGUCGGAGGCGacgAGUu -3'
miRNA:   3'- -CCGGa---CCAgUAgCAGCCUCUGCa--UCG- -5'
18325 5' -54.4 NC_004681.1 + 16496 0.72 0.558782
Target:  5'- uGGCCUGGUCAcCcUUGGAG--GUGGCc -3'
miRNA:   3'- -CCGGACCAGUaGcAGCCUCugCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 65758 0.7 0.622453
Target:  5'- -uCCUGGUCGUUGUCGucccAGGCGU-GCu -3'
miRNA:   3'- ccGGACCAGUAGCAGCc---UCUGCAuCG- -5'
18325 5' -54.4 NC_004681.1 + 55870 0.7 0.654507
Target:  5'- uGGCgaGGUCGUUGuuccaguaaUCGGGGugcuCGUGGUa -3'
miRNA:   3'- -CCGgaCCAGUAGC---------AGCCUCu---GCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 34552 0.7 0.669421
Target:  5'- cGGCa-GGUCAUCGUCGGcggcaccgucaucugGGAUGgcaucaUGGCg -3'
miRNA:   3'- -CCGgaCCAGUAGCAGCC---------------UCUGC------AUCG- -5'
18325 5' -54.4 NC_004681.1 + 67733 0.69 0.696926
Target:  5'- uGGCCaaccUGGUC-UCGUCGGAcaAUGUgcGGCg -3'
miRNA:   3'- -CCGG----ACCAGuAGCAGCCUc-UGCA--UCG- -5'
18325 5' -54.4 NC_004681.1 + 66330 0.69 0.697977
Target:  5'- uGGCC-GGUaCAUCGacuacaccuucgacaCGGAGACGggggAGCa -3'
miRNA:   3'- -CCGGaCCA-GUAGCa--------------GCCUCUGCa---UCG- -5'
18325 5' -54.4 NC_004681.1 + 50404 0.69 0.707408
Target:  5'- uGCCcaUGaGUucagCGUCGgccgCGGGGACGUGGCc -3'
miRNA:   3'- cCGG--AC-CA----GUAGCa---GCCUCUGCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 27605 0.69 0.707408
Target:  5'- cGCCUgGGUCAcCcUCGGuGGCGcUGGCg -3'
miRNA:   3'- cCGGA-CCAGUaGcAGCCuCUGC-AUCG- -5'
18325 5' -54.4 NC_004681.1 + 51727 0.69 0.71782
Target:  5'- -aCCUGGUgGUCGUCGGcggccgccccGGCGcgGGCa -3'
miRNA:   3'- ccGGACCAgUAGCAGCCu---------CUGCa-UCG- -5'
18325 5' -54.4 NC_004681.1 + 60682 0.69 0.728153
Target:  5'- cGGCCUcGUCGagcaccacguUCGUCGGccagcggcccgAGGCGUgcGGCg -3'
miRNA:   3'- -CCGGAcCAGU----------AGCAGCC-----------UCUGCA--UCG- -5'
18325 5' -54.4 NC_004681.1 + 57091 0.68 0.748536
Target:  5'- cGGCUacGGUCuuGUCGUagUGGucGGCGUAGCg -3'
miRNA:   3'- -CCGGa-CCAG--UAGCA--GCCu-CUGCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 28402 0.68 0.748536
Target:  5'- uGGCCUggcGGUCAcccCGgcucccgCGGAGAUGgAGCu -3'
miRNA:   3'- -CCGGA---CCAGUa--GCa------GCCUCUGCaUCG- -5'
18325 5' -54.4 NC_004681.1 + 34007 0.68 0.758565
Target:  5'- aGGUgUGcccGUCGUCGUggucgacugCGGAGACGaGGCc -3'
miRNA:   3'- -CCGgAC---CAGUAGCA---------GCCUCUGCaUCG- -5'
18325 5' -54.4 NC_004681.1 + 50845 0.68 0.767488
Target:  5'- cGGCUcggacuugcucgaUGGUCAUCccggguucgggGUCGGGGAguucguagaUGUAGCc -3'
miRNA:   3'- -CCGG-------------ACCAGUAG-----------CAGCCUCU---------GCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.