Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18325 | 5' | -54.4 | NC_004681.1 | + | 66330 | 0.69 | 0.697977 |
Target: 5'- uGGCC-GGUaCAUCGacuacaccuucgacaCGGAGACGggggAGCa -3' miRNA: 3'- -CCGGaCCA-GUAGCa--------------GCCUCUGCa---UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 67733 | 0.69 | 0.696926 |
Target: 5'- uGGCCaaccUGGUC-UCGUCGGAcaAUGUgcGGCg -3' miRNA: 3'- -CCGG----ACCAGuAGCAGCCUc-UGCA--UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 34552 | 0.7 | 0.669421 |
Target: 5'- cGGCa-GGUCAUCGUCGGcggcaccgucaucugGGAUGgcaucaUGGCg -3' miRNA: 3'- -CCGgaCCAGUAGCAGCC---------------UCUGC------AUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 55870 | 0.7 | 0.654507 |
Target: 5'- uGGCgaGGUCGUUGuuccaguaaUCGGGGugcuCGUGGUa -3' miRNA: 3'- -CCGgaCCAGUAGC---------AGCCUCu---GCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 65758 | 0.7 | 0.622453 |
Target: 5'- -uCCUGGUCGUUGUCGucccAGGCGU-GCu -3' miRNA: 3'- ccGGACCAGUAGCAGCc---UCUGCAuCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 16496 | 0.72 | 0.558782 |
Target: 5'- uGGCCUGGUCAcCcUUGGAG--GUGGCc -3' miRNA: 3'- -CCGGACCAGUaGcAGCCUCugCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 2836 | 0.72 | 0.517335 |
Target: 5'- cGGCCcacaGGUgAUgGUCGGAGGCGacgAGUu -3' miRNA: 3'- -CCGGa---CCAgUAgCAGCCUCUGCa--UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 20076 | 0.72 | 0.517335 |
Target: 5'- cGGCCUGGagGUUGUCGGcGAaggaGaAGCg -3' miRNA: 3'- -CCGGACCagUAGCAGCCuCUg---CaUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 52328 | 0.76 | 0.35063 |
Target: 5'- cGGCCagguUGGUCAg-GUCGGGGAUGgcggGGCc -3' miRNA: 3'- -CCGG----ACCAGUagCAGCCUCUGCa---UCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 50151 | 0.79 | 0.214518 |
Target: 5'- aGGCa--GUCGauggCGUCGGAGACGUAGCc -3' miRNA: 3'- -CCGgacCAGUa---GCAGCCUCUGCAUCG- -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 7711 | 0.81 | 0.156652 |
Target: 5'- cGGUCUGGcCAUCGUCGGcgaagucgcGGGCGUAGg -3' miRNA: 3'- -CCGGACCaGUAGCAGCC---------UCUGCAUCg -5' |
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18325 | 5' | -54.4 | NC_004681.1 | + | 54833 | 1.15 | 0.000911 |
Target: 5'- gGGCCUGGUCAUCGUCGGAGACGUAGCg -3' miRNA: 3'- -CCGGACCAGUAGCAGCCUCUGCAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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