miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18325 5' -54.4 NC_004681.1 + 52328 0.76 0.35063
Target:  5'- cGGCCagguUGGUCAg-GUCGGGGAUGgcggGGCc -3'
miRNA:   3'- -CCGG----ACCAGUagCAGCCUCUGCa---UCG- -5'
18325 5' -54.4 NC_004681.1 + 20076 0.72 0.517335
Target:  5'- cGGCCUGGagGUUGUCGGcGAaggaGaAGCg -3'
miRNA:   3'- -CCGGACCagUAGCAGCCuCUg---CaUCG- -5'
18325 5' -54.4 NC_004681.1 + 66330 0.69 0.697977
Target:  5'- uGGCC-GGUaCAUCGacuacaccuucgacaCGGAGACGggggAGCa -3'
miRNA:   3'- -CCGGaCCA-GUAGCa--------------GCCUCUGCa---UCG- -5'
18325 5' -54.4 NC_004681.1 + 27605 0.69 0.707408
Target:  5'- cGCCUgGGUCAcCcUCGGuGGCGcUGGCg -3'
miRNA:   3'- cCGGA-CCAGUaGcAGCCuCUGC-AUCG- -5'
18325 5' -54.4 NC_004681.1 + 51727 0.69 0.71782
Target:  5'- -aCCUGGUgGUCGUCGGcggccgccccGGCGcgGGCa -3'
miRNA:   3'- ccGGACCAgUAGCAGCCu---------CUGCa-UCG- -5'
18325 5' -54.4 NC_004681.1 + 28402 0.68 0.748536
Target:  5'- uGGCCUggcGGUCAcccCGgcucccgCGGAGAUGgAGCu -3'
miRNA:   3'- -CCGGA---CCAGUa--GCa------GCCUCUGCaUCG- -5'
18325 5' -54.4 NC_004681.1 + 34007 0.68 0.758565
Target:  5'- aGGUgUGcccGUCGUCGUggucgacugCGGAGACGaGGCc -3'
miRNA:   3'- -CCGgAC---CAGUAGCA---------GCCUCUGCaUCG- -5'
18325 5' -54.4 NC_004681.1 + 16433 0.68 0.778248
Target:  5'- uGGCUgaugacccaUGGUgGUC-UCGGcGugGUGGCg -3'
miRNA:   3'- -CCGG---------ACCAgUAGcAGCCuCugCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 2023 0.68 0.78788
Target:  5'- cGGCCaGGUgGUCGU-GGAgGGCGgccGCa -3'
miRNA:   3'- -CCGGaCCAgUAGCAgCCU-CUGCau-CG- -5'
18325 5' -54.4 NC_004681.1 + 55005 0.66 0.858634
Target:  5'- cGGCCUgaagugccuucaGGUCG-CGccCGGGgaacuucuGACGUAGCg -3'
miRNA:   3'- -CCGGA------------CCAGUaGCa-GCCU--------CUGCAUCG- -5'
18325 5' -54.4 NC_004681.1 + 66902 0.66 0.874251
Target:  5'- aGUCUGGcgagcuguccaUCGUCGUCGuuGACucuGUGGCg -3'
miRNA:   3'- cCGGACC-----------AGUAGCAGCcuCUG---CAUCG- -5'
18325 5' -54.4 NC_004681.1 + 67733 0.69 0.696926
Target:  5'- uGGCCaaccUGGUC-UCGUCGGAcaAUGUgcGGCg -3'
miRNA:   3'- -CCGG----ACCAGuAGCAGCCUc-UGCA--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.