miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 45250 0.66 0.664206
Target:  5'- aGGGGcaggugcucgUGGCAgCACCGGAcGCcccGCCCg -3'
miRNA:   3'- -CCCCa---------GCCGUgGUGGCUU-CGac-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 39121 0.66 0.664206
Target:  5'- uGGGUgGGCgcACCACC--AGCaGGCCg -3'
miRNA:   3'- cCCCAgCCG--UGGUGGcuUCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 42122 0.66 0.664206
Target:  5'- -aGGUUGGCGCgCACgagguuggcguCGAcaaGGCUGGCCg -3'
miRNA:   3'- ccCCAGCCGUG-GUG-----------GCU---UCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 38875 0.66 0.664206
Target:  5'- aGGaGaGcUGGCGCCACUGGAGaaGGCCa -3'
miRNA:   3'- -CC-C-CaGCCGUGGUGGCUUCgaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 24893 0.66 0.664206
Target:  5'- aGGG-CGGCgACC-CCGGcaagugggcAGCUGccACCCu -3'
miRNA:   3'- cCCCaGCCG-UGGuGGCU---------UCGAC--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 67879 0.66 0.653831
Target:  5'- cGGGUggaGGCuACgGCCGAGGCUaGGCa- -3'
miRNA:   3'- cCCCAg--CCG-UGgUGGCUUCGA-CUGgg -5'
18327 3' -58.8 NC_004681.1 + 75809 0.66 0.653831
Target:  5'- gGGGGUgguugCGGUcucgaaaucGCCGCCucGGggGACCCu -3'
miRNA:   3'- -CCCCA-----GCCG---------UGGUGGcuUCgaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 1664 0.66 0.649677
Target:  5'- uGGGGcCGucuuccucuccccCGCCGCCcagcugaAGGCUGGCCCg -3'
miRNA:   3'- -CCCCaGCc------------GUGGUGGc------UUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 24854 0.66 0.64344
Target:  5'- cGGG-CGGCgGCCGCCaAGGCU--CCCu -3'
miRNA:   3'- cCCCaGCCG-UGGUGGcUUCGAcuGGG- -5'
18327 3' -58.8 NC_004681.1 + 51538 0.66 0.64344
Target:  5'- -aGGUCGacGCGCuCAUCGcccAAGCUGGCCa -3'
miRNA:   3'- ccCCAGC--CGUG-GUGGC---UUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 61171 0.66 0.64344
Target:  5'- cGGGGUCGGCGgUcagcguGCCGAcgAGaUGuACCUg -3'
miRNA:   3'- -CCCCAGCCGUgG------UGGCU--UCgAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 38915 0.66 0.64136
Target:  5'- uGGGUCaauccauGGCcagccugcaaccgGCCACCGugcaucugcGGCUGACCg -3'
miRNA:   3'- cCCCAG-------CCG-------------UGGUGGCu--------UCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 42052 0.66 0.633038
Target:  5'- -cGGUUaagcaGGCGCCAUUGAGGUUGGCg- -3'
miRNA:   3'- ccCCAG-----CCGUGGUGGCUUCGACUGgg -5'
18327 3' -58.8 NC_004681.1 + 65897 0.66 0.633038
Target:  5'- cGGGGU-GGgGCgGCCGAGGCcgaGACg- -3'
miRNA:   3'- -CCCCAgCCgUGgUGGCUUCGa--CUGgg -5'
18327 3' -58.8 NC_004681.1 + 68884 0.66 0.633038
Target:  5'- uGGccgCGGCcgacGCCAUCGAGgcGCUGACCa -3'
miRNA:   3'- cCCca-GCCG----UGGUGGCUU--CGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 30258 0.66 0.633038
Target:  5'- cGGcGGcCGGUacggcgucgagACCACCGAuccguGgUGACCUg -3'
miRNA:   3'- -CC-CCaGCCG-----------UGGUGGCUu----CgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 23655 0.66 0.622636
Target:  5'- cGGGUgaGC-CCAUCG-AGCUGGCCUc -3'
miRNA:   3'- cCCCAgcCGuGGUGGCuUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 17641 0.66 0.622636
Target:  5'- aGGG--GGUGCCGCCagGGAGCgUGGCCUg -3'
miRNA:   3'- cCCCagCCGUGGUGG--CUUCG-ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 24191 0.66 0.622636
Target:  5'- -aGGcUGGCGCCggaACCuu-GCUGGCCCa -3'
miRNA:   3'- ccCCaGCCGUGG---UGGcuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 9347 0.66 0.622636
Target:  5'- uGGGGcguccCGGUugucACCACCcc-GCUGAUCCc -3'
miRNA:   3'- -CCCCa----GCCG----UGGUGGcuuCGACUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.