miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 18057 0.68 0.500481
Target:  5'- uGGGcugCGGgGcCCACCGGAGCc-GCCCu -3'
miRNA:   3'- cCCCa--GCCgU-GGUGGCUUCGacUGGG- -5'
18327 3' -58.8 NC_004681.1 + 34829 0.68 0.510327
Target:  5'- aGGGG-CGGCG--GCCGAAGCgcgcggGAauuCCCa -3'
miRNA:   3'- -CCCCaGCCGUggUGGCUUCGa-----CU---GGG- -5'
18327 3' -58.8 NC_004681.1 + 50320 0.68 0.510327
Target:  5'- --cGagGGCGCCAUUGGAGCUGGCgaCCa -3'
miRNA:   3'- cccCagCCGUGGUGGCUUCGACUG--GG- -5'
18327 3' -58.8 NC_004681.1 + 43031 0.68 0.514289
Target:  5'- cGGuUCGGCgcagcguucgcagccGCCACCGGAGUgagcaggaUGAUCCa -3'
miRNA:   3'- cCCcAGCCG---------------UGGUGGCUUCG--------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 21361 0.68 0.520254
Target:  5'- gGGGGUCGccagggaGCCACa--GGCUGGCCg -3'
miRNA:   3'- -CCCCAGCcg-----UGGUGgcuUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 8379 0.68 0.530255
Target:  5'- cGGcGUCcGCGCCACCGAGGCUcuUCa -3'
miRNA:   3'- cCC-CAGcCGUGGUGGCUUCGAcuGGg -5'
18327 3' -58.8 NC_004681.1 + 59012 0.68 0.540325
Target:  5'- gGGGGagGGCGcCCACCGcgAAuuUGACCa -3'
miRNA:   3'- -CCCCagCCGU-GGUGGC--UUcgACUGGg -5'
18327 3' -58.8 NC_004681.1 + 30152 0.68 0.550459
Target:  5'- cGGGcucaggCGGCGCgGCCGcgGAGUgGACCUa -3'
miRNA:   3'- cCCCa-----GCCGUGgUGGC--UUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 25300 0.69 0.49072
Target:  5'- -cGGUCGccgccguugccaGCGCCGCCaGggGCcUGACCg -3'
miRNA:   3'- ccCCAGC------------CGUGGUGG-CuuCG-ACUGGg -5'
18327 3' -58.8 NC_004681.1 + 20035 0.69 0.49072
Target:  5'- cGGGGa--GCACCugCGuguuGAGCaGGCCCg -3'
miRNA:   3'- -CCCCagcCGUGGugGC----UUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 21550 0.69 0.452608
Target:  5'- cGGGGgcguaGGCAUUGCCGggGUUGAg-- -3'
miRNA:   3'- -CCCCag---CCGUGGUGGCuuCGACUggg -5'
18327 3' -58.8 NC_004681.1 + 658 0.69 0.452608
Target:  5'- uGGGGaugCGGCcguCACUGGAGCUuguGCCCg -3'
miRNA:   3'- -CCCCa--GCCGug-GUGGCUUCGAc--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 27340 0.69 0.49072
Target:  5'- -aGGUCa-CACCGCCcccauucGAGCUGACCCu -3'
miRNA:   3'- ccCCAGccGUGGUGGc------UUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 6394 0.69 0.471469
Target:  5'- aGGGGgaggaGGCcCCggcGCCGAAGC-GACCg -3'
miRNA:   3'- -CCCCag---CCGuGG---UGGCUUCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 18353 0.69 0.452608
Target:  5'- cGGGUucacccccggUGGCGCCAUCGAcauGGCaGGCCa -3'
miRNA:   3'- cCCCA----------GCCGUGGUGGCU---UCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 2927 0.69 0.451676
Target:  5'- uGGGcGaCGGCACCgccacgcgcGCCGAguucaccAGCgagGACCCc -3'
miRNA:   3'- -CCC-CaGCCGUGG---------UGGCU-------UCGa--CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 19224 0.69 0.49072
Target:  5'- gGGGGUCcaGGCGuCCACCc-AGCUGcgaACCUc -3'
miRNA:   3'- -CCCCAG--CCGU-GGUGGcuUCGAC---UGGG- -5'
18327 3' -58.8 NC_004681.1 + 24721 0.7 0.43782
Target:  5'- uGGGUCGGCAUCGCagucgacaccggcaaCGggGgaGAUCa -3'
miRNA:   3'- cCCCAGCCGUGGUG---------------GCuuCgaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 68435 0.7 0.434167
Target:  5'- -aGGaCGGCACUcuacugaggcuGCCGAagaaGGCUGACCUc -3'
miRNA:   3'- ccCCaGCCGUGG-----------UGGCU----UCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 7879 0.7 0.425111
Target:  5'- gGGGGUUGaGCAguCCuuCGAGGCgGGCCUu -3'
miRNA:   3'- -CCCCAGC-CGU--GGugGCUUCGaCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.