Results 61 - 80 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18327 | 3' | -58.8 | NC_004681.1 | + | 68435 | 0.7 | 0.434167 |
Target: 5'- -aGGaCGGCACUcuacugaggcuGCCGAagaaGGCUGACCUc -3' miRNA: 3'- ccCCaGCCGUGG-----------UGGCU----UCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 37570 | 0.71 | 0.36502 |
Target: 5'- cGGGGUCGaGCuguggugaucgGCCACguaCGAGGCguaccugaaGACCCg -3' miRNA: 3'- -CCCCAGC-CG-----------UGGUG---GCUUCGa--------CUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 26323 | 0.71 | 0.341125 |
Target: 5'- aGGGGgcgGGCAUCGCCGccguGGCgGGCCa -3' miRNA: 3'- -CCCCag-CCGUGGUGGCu---UCGaCUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 18587 | 0.71 | 0.341125 |
Target: 5'- ---cUCGGCGCCgauACCGAucAGCUGGCCa -3' miRNA: 3'- ccccAGCCGUGG---UGGCU--UCGACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 42275 | 0.71 | 0.356928 |
Target: 5'- cGGaGGUUGGCACCcUCGAAGgaGGCg- -3' miRNA: 3'- -CC-CCAGCCGUGGuGGCUUCgaCUGgg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 8884 | 0.71 | 0.36502 |
Target: 5'- aGGGcGUUGGCgACCuuGCCGAccuGCUcguaGACCCg -3' miRNA: 3'- -CCC-CAGCCG-UGG--UGGCUu--CGA----CUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 42212 | 0.71 | 0.373238 |
Target: 5'- -aGGUUGGCAUCGUCaAAGUUGGCCCg -3' miRNA: 3'- ccCCAGCCGUGGUGGcUUCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 67518 | 0.71 | 0.38158 |
Target: 5'- cGGGUUGGCcuugaGCCACUGGacggccuugGGCUuGCCCu -3' miRNA: 3'- cCCCAGCCG-----UGGUGGCU---------UCGAcUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 7330 | 0.71 | 0.38158 |
Target: 5'- ----cCGGCAC--CCGggGCUGACCCc -3' miRNA: 3'- ccccaGCCGUGguGGCuuCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 15046 | 0.72 | 0.333416 |
Target: 5'- -aGGUCGGCACCAUgcucgCGcAGaUGACCCa -3' miRNA: 3'- ccCCAGCCGUGGUG-----GCuUCgACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 29607 | 0.72 | 0.336484 |
Target: 5'- cGGGUUGGaugcgaacgugacaGCCACCGAGGUgGuCCCg -3' miRNA: 3'- cCCCAGCCg-------------UGGUGGCUUCGaCuGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 475 | 0.73 | 0.255209 |
Target: 5'- uGGGGa-GGCGCCugGCCGAgaugcugggcgucaAGCUGgACCCg -3' miRNA: 3'- -CCCCagCCGUGG--UGGCU--------------UCGAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 59780 | 0.73 | 0.263382 |
Target: 5'- aGGGGgcguggCGGCGCUGCCauguuGGCUGgaaGCCCa -3' miRNA: 3'- -CCCCa-----GCCGUGGUGGcu---UCGAC---UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 18451 | 0.73 | 0.283051 |
Target: 5'- ----aUGGCGCCACCGggGgUGaACCCg -3' miRNA: 3'- ccccaGCCGUGGUGGCuuCgAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 33101 | 0.74 | 0.244837 |
Target: 5'- -aGGUCGGCaggccGCUACCGGgguAGCUGACaCCc -3' miRNA: 3'- ccCCAGCCG-----UGGUGGCU---UCGACUG-GG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 27708 | 0.74 | 0.250895 |
Target: 5'- --cGcCaGCGCCACCGAGGgUGACCCa -3' miRNA: 3'- cccCaGcCGUGGUGGCUUCgACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 14544 | 0.75 | 0.221813 |
Target: 5'- cGGGGUCGGCAUCGCCGccaccGCcaccacGGCCg -3' miRNA: 3'- -CCCCAGCCGUGGUGGCuu---CGa-----CUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 32023 | 0.75 | 0.205776 |
Target: 5'- cGGGuGUCGGCACgGCCGguG-UGAUCCu -3' miRNA: 3'- -CCC-CAGCCGUGgUGGCuuCgACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 49343 | 0.75 | 0.19565 |
Target: 5'- -cGG-CGGCGCCGCgGgcGCUGACCa -3' miRNA: 3'- ccCCaGCCGUGGUGgCuuCGACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 22800 | 0.76 | 0.190753 |
Target: 5'- uGGGccgcuacuaCGGCAUCGCCGggGC-GACCCc -3' miRNA: 3'- cCCCa--------GCCGUGGUGGCuuCGaCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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