miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 57004 1.14 0.000345
Target:  5'- cGGGGUCGGCACCACCGAAGCUGACCCg -3'
miRNA:   3'- -CCCCAGCCGUGGUGGCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 6356 0.8 0.093926
Target:  5'- cGGGGU-GGCGaCACCGGAGUUGACCa -3'
miRNA:   3'- -CCCCAgCCGUgGUGGCUUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 31833 0.77 0.145154
Target:  5'- cGGGUCGGCGCCugCcacuucggacaGGAGCgcgauggagggcuggUGACCCa -3'
miRNA:   3'- cCCCAGCCGUGGugG-----------CUUCG---------------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 48799 0.76 0.189304
Target:  5'- cGGGcGacucgaagccgaacUCGGC-CCAUgGGAGCUGGCCCg -3'
miRNA:   3'- -CCC-C--------------AGCCGuGGUGgCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 22800 0.76 0.190753
Target:  5'- uGGGccgcuacuaCGGCAUCGCCGggGC-GACCCc -3'
miRNA:   3'- cCCCa--------GCCGUGGUGGCuuCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 49343 0.75 0.19565
Target:  5'- -cGG-CGGCGCCGCgGgcGCUGACCa -3'
miRNA:   3'- ccCCaGCCGUGGUGgCuuCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 32023 0.75 0.205776
Target:  5'- cGGGuGUCGGCACgGCCGguG-UGAUCCu -3'
miRNA:   3'- -CCC-CAGCCGUGgUGGCuuCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 14544 0.75 0.221813
Target:  5'- cGGGGUCGGCAUCGCCGccaccGCcaccacGGCCg -3'
miRNA:   3'- -CCCCAGCCGUGGUGGCuu---CGa-----CUGGg -5'
18327 3' -58.8 NC_004681.1 + 33101 0.74 0.244837
Target:  5'- -aGGUCGGCaggccGCUACCGGgguAGCUGACaCCc -3'
miRNA:   3'- ccCCAGCCG-----UGGUGGCU---UCGACUG-GG- -5'
18327 3' -58.8 NC_004681.1 + 27708 0.74 0.250895
Target:  5'- --cGcCaGCGCCACCGAGGgUGACCCa -3'
miRNA:   3'- cccCaGcCGUGGUGGCUUCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 475 0.73 0.255209
Target:  5'- uGGGGa-GGCGCCugGCCGAgaugcugggcgucaAGCUGgACCCg -3'
miRNA:   3'- -CCCCagCCGUGG--UGGCU--------------UCGAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 59780 0.73 0.263382
Target:  5'- aGGGGgcguggCGGCGCUGCCauguuGGCUGgaaGCCCa -3'
miRNA:   3'- -CCCCa-----GCCGUGGUGGcu---UCGAC---UGGG- -5'
18327 3' -58.8 NC_004681.1 + 18451 0.73 0.283051
Target:  5'- ----aUGGCGCCACCGggGgUGaACCCg -3'
miRNA:   3'- ccccaGCCGUGGUGGCuuCgAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 15046 0.72 0.333416
Target:  5'- -aGGUCGGCACCAUgcucgCGcAGaUGACCCa -3'
miRNA:   3'- ccCCAGCCGUGGUG-----GCuUCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 29607 0.72 0.336484
Target:  5'- cGGGUUGGaugcgaacgugacaGCCACCGAGGUgGuCCCg -3'
miRNA:   3'- cCCCAGCCg-------------UGGUGGCUUCGaCuGGG- -5'
18327 3' -58.8 NC_004681.1 + 26323 0.71 0.341125
Target:  5'- aGGGGgcgGGCAUCGCCGccguGGCgGGCCa -3'
miRNA:   3'- -CCCCag-CCGUGGUGGCu---UCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 18587 0.71 0.341125
Target:  5'- ---cUCGGCGCCgauACCGAucAGCUGGCCa -3'
miRNA:   3'- ccccAGCCGUGG---UGGCU--UCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 42275 0.71 0.356928
Target:  5'- cGGaGGUUGGCACCcUCGAAGgaGGCg- -3'
miRNA:   3'- -CC-CCAGCCGUGGuGGCUUCgaCUGgg -5'
18327 3' -58.8 NC_004681.1 + 8884 0.71 0.36502
Target:  5'- aGGGcGUUGGCgACCuuGCCGAccuGCUcguaGACCCg -3'
miRNA:   3'- -CCC-CAGCCG-UGG--UGGCUu--CGA----CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 37570 0.71 0.36502
Target:  5'- cGGGGUCGaGCuguggugaucgGCCACguaCGAGGCguaccugaaGACCCg -3'
miRNA:   3'- -CCCCAGC-CG-----------UGGUG---GCUUCGa--------CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.