miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 21361 0.68 0.520254
Target:  5'- gGGGGUCGccagggaGCCACa--GGCUGGCCg -3'
miRNA:   3'- -CCCCAGCcg-----UGGUGgcuUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 8379 0.68 0.530255
Target:  5'- cGGcGUCcGCGCCACCGAGGCUcuUCa -3'
miRNA:   3'- cCC-CAGcCGUGGUGGCUUCGAcuGGg -5'
18327 3' -58.8 NC_004681.1 + 59012 0.68 0.540325
Target:  5'- gGGGGagGGCGcCCACCGcgAAuuUGACCa -3'
miRNA:   3'- -CCCCagCCGU-GGUGGC--UUcgACUGGg -5'
18327 3' -58.8 NC_004681.1 + 37401 0.68 0.540325
Target:  5'- cGGGcaaGC-CCAucCUGGAGCUGACCCg -3'
miRNA:   3'- cCCCagcCGuGGU--GGCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 25202 0.68 0.540325
Target:  5'- cGGGGUgGGUccgcgGCCaACCGAggugccgaggaGGCUGagcgaggugccGCCCg -3'
miRNA:   3'- -CCCCAgCCG-----UGG-UGGCU-----------UCGAC-----------UGGG- -5'
18327 3' -58.8 NC_004681.1 + 30152 0.68 0.550459
Target:  5'- cGGGcucaggCGGCGCgGCCGcgGAGUgGACCUa -3'
miRNA:   3'- cCCCa-----GCCGUGgUGGC--UUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 9006 0.68 0.550459
Target:  5'- cGGGGUaccCGCCGCCagccaGGAGCUGgACCUc -3'
miRNA:   3'- -CCCCAgccGUGGUGG-----CUUCGAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 17707 0.67 0.570894
Target:  5'- cGGGGUCGuccGCgcccgaGCCGCCGAuaccacGGCgcuUGGCCg -3'
miRNA:   3'- -CCCCAGC---CG------UGGUGGCU------UCG---ACUGGg -5'
18327 3' -58.8 NC_004681.1 + 22859 0.67 0.570894
Target:  5'- uGGGGUCGucaauGCGaCACuCGAGGUUcACCCg -3'
miRNA:   3'- -CCCCAGC-----CGUgGUG-GCUUCGAcUGGG- -5'
18327 3' -58.8 NC_004681.1 + 41960 0.67 0.581181
Target:  5'- ----aUGGCGCCugcuuaACCGgcGCUGACCUg -3'
miRNA:   3'- ccccaGCCGUGG------UGGCuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 61071 0.67 0.581181
Target:  5'- --cGUCGGCacgcugACCGCCGAccccgAGCUGcgguucACCCa -3'
miRNA:   3'- cccCAGCCG------UGGUGGCU-----UCGAC------UGGG- -5'
18327 3' -58.8 NC_004681.1 + 8658 0.67 0.581181
Target:  5'- cGGGGgcgaaGGUACCcgucgaACCGAAGggguuCUGGCCg -3'
miRNA:   3'- -CCCCag---CCGUGG------UGGCUUC-----GACUGGg -5'
18327 3' -58.8 NC_004681.1 + 41943 0.67 0.591507
Target:  5'- -aGGUCGGCuCCG-CGGAGaucGGCCCg -3'
miRNA:   3'- ccCCAGCCGuGGUgGCUUCga-CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 22909 0.67 0.591507
Target:  5'- cGGGGUcgcccCGGCGauGCCGuaguAGC-GGCCCa -3'
miRNA:   3'- -CCCCA-----GCCGUggUGGCu---UCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 13781 0.67 0.601863
Target:  5'- -aGGaCGGCGCC-CCcAAGCUGucguCCCg -3'
miRNA:   3'- ccCCaGCCGUGGuGGcUUCGACu---GGG- -5'
18327 3' -58.8 NC_004681.1 + 17512 0.67 0.601863
Target:  5'- --uGUUGGCGCCACCcguGggGC-GGCCg -3'
miRNA:   3'- cccCAGCCGUGGUGG---CuuCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 30852 0.67 0.601863
Target:  5'- uGGaGGaCGGCAcgccgcCCGCCGAcccGCUGgaGCCCc -3'
miRNA:   3'- -CC-CCaGCCGU------GGUGGCUu--CGAC--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 48117 0.67 0.601863
Target:  5'- -cGGUgGGCAUCGa-GAAGCagaUGGCCCg -3'
miRNA:   3'- ccCCAgCCGUGGUggCUUCG---ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 23602 0.67 0.611203
Target:  5'- cGGGUUGGUGCCGCUGGuuaucgucuugAGUuccccgucugcgaUGACCUu -3'
miRNA:   3'- cCCCAGCCGUGGUGGCU-----------UCG-------------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 6892 0.67 0.612242
Target:  5'- cGGGGUUGagaGCACCGCggUGAAGCcgccauuggGGCCg -3'
miRNA:   3'- -CCCCAGC---CGUGGUG--GCUUCGa--------CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.