Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18327 | 3' | -58.8 | NC_004681.1 | + | 40097 | 0.66 | 0.621596 |
Target: 5'- aGGccaagCGGCGCUgguucaaggccgaGCCGGugAGUUGACCCg -3' miRNA: 3'- cCCca---GCCGUGG-------------UGGCU--UCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 25052 | 0.66 | 0.621596 |
Target: 5'- gGGGGUgaacuggaugaugCGGgGCCGUCGAAGUcGACgCCg -3' miRNA: 3'- -CCCCA-------------GCCgUGGUGGCUUCGaCUG-GG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 23324 | 0.67 | 0.616398 |
Target: 5'- gGGGGUUGaGCagauugauGCCGCCGAacacgcccuccaggaAGUUGAgcaaCCCu -3' miRNA: 3'- -CCCCAGC-CG--------UGGUGGCU---------------UCGACU----GGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 6892 | 0.67 | 0.612242 |
Target: 5'- cGGGGUUGagaGCACCGCggUGAAGCcgccauuggGGCCg -3' miRNA: 3'- -CCCCAGC---CGUGGUG--GCUUCGa--------CUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 16580 | 0.67 | 0.612242 |
Target: 5'- cGGGGcgCGGCGCCGaguaguCCGugggGGGCUGGaacgCCa -3' miRNA: 3'- -CCCCa-GCCGUGGU------GGC----UUCGACUg---GG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 23602 | 0.67 | 0.611203 |
Target: 5'- cGGGUUGGUGCCGCUGGuuaucgucuugAGUuccccgucugcgaUGACCUu -3' miRNA: 3'- cCCCAGCCGUGGUGGCU-----------UCG-------------ACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 48117 | 0.67 | 0.601863 |
Target: 5'- -cGGUgGGCAUCGa-GAAGCagaUGGCCCg -3' miRNA: 3'- ccCCAgCCGUGGUggCUUCG---ACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 13781 | 0.67 | 0.601863 |
Target: 5'- -aGGaCGGCGCC-CCcAAGCUGucguCCCg -3' miRNA: 3'- ccCCaGCCGUGGuGGcUUCGACu---GGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 17512 | 0.67 | 0.601863 |
Target: 5'- --uGUUGGCGCCACCcguGggGC-GGCCg -3' miRNA: 3'- cccCAGCCGUGGUGG---CuuCGaCUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 30852 | 0.67 | 0.601863 |
Target: 5'- uGGaGGaCGGCAcgccgcCCGCCGAcccGCUGgaGCCCc -3' miRNA: 3'- -CC-CCaGCCGU------GGUGGCUu--CGAC--UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 41943 | 0.67 | 0.591507 |
Target: 5'- -aGGUCGGCuCCG-CGGAGaucGGCCCg -3' miRNA: 3'- ccCCAGCCGuGGUgGCUUCga-CUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 22909 | 0.67 | 0.591507 |
Target: 5'- cGGGGUcgcccCGGCGauGCCGuaguAGC-GGCCCa -3' miRNA: 3'- -CCCCA-----GCCGUggUGGCu---UCGaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 8658 | 0.67 | 0.581181 |
Target: 5'- cGGGGgcgaaGGUACCcgucgaACCGAAGggguuCUGGCCg -3' miRNA: 3'- -CCCCag---CCGUGG------UGGCUUC-----GACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 61071 | 0.67 | 0.581181 |
Target: 5'- --cGUCGGCacgcugACCGCCGAccccgAGCUGcgguucACCCa -3' miRNA: 3'- cccCAGCCG------UGGUGGCU-----UCGAC------UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 41960 | 0.67 | 0.581181 |
Target: 5'- ----aUGGCGCCugcuuaACCGgcGCUGACCUg -3' miRNA: 3'- ccccaGCCGUGG------UGGCuuCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 17707 | 0.67 | 0.570894 |
Target: 5'- cGGGGUCGuccGCgcccgaGCCGCCGAuaccacGGCgcuUGGCCg -3' miRNA: 3'- -CCCCAGC---CG------UGGUGGCU------UCG---ACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 22859 | 0.67 | 0.570894 |
Target: 5'- uGGGGUCGucaauGCGaCACuCGAGGUUcACCCg -3' miRNA: 3'- -CCCCAGC-----CGUgGUG-GCUUCGAcUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 9006 | 0.68 | 0.550459 |
Target: 5'- cGGGGUaccCGCCGCCagccaGGAGCUGgACCUc -3' miRNA: 3'- -CCCCAgccGUGGUGG-----CUUCGAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 30152 | 0.68 | 0.550459 |
Target: 5'- cGGGcucaggCGGCGCgGCCGcgGAGUgGACCUa -3' miRNA: 3'- cCCCa-----GCCGUGgUGGC--UUCGaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 37401 | 0.68 | 0.540325 |
Target: 5'- cGGGcaaGC-CCAucCUGGAGCUGACCCg -3' miRNA: 3'- cCCCagcCGuGGU--GGCUUCGACUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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