miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 475 0.73 0.255209
Target:  5'- uGGGGa-GGCGCCugGCCGAgaugcugggcgucaAGCUGgACCCg -3'
miRNA:   3'- -CCCCagCCGUGG--UGGCU--------------UCGAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 658 0.69 0.452608
Target:  5'- uGGGGaugCGGCcguCACUGGAGCUuguGCCCg -3'
miRNA:   3'- -CCCCa--GCCGug-GUGGCUUCGAc--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 1664 0.66 0.649677
Target:  5'- uGGGGcCGucuuccucuccccCGCCGCCcagcugaAGGCUGGCCCg -3'
miRNA:   3'- -CCCCaGCc------------GUGGUGGc------UUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 2927 0.69 0.451676
Target:  5'- uGGGcGaCGGCACCgccacgcgcGCCGAguucaccAGCgagGACCCc -3'
miRNA:   3'- -CCC-CaGCCGUGG---------UGGCU-------UCGa--CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 6356 0.8 0.093926
Target:  5'- cGGGGU-GGCGaCACCGGAGUUGACCa -3'
miRNA:   3'- -CCCCAgCCGUgGUGGCUUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 6394 0.69 0.471469
Target:  5'- aGGGGgaggaGGCcCCggcGCCGAAGC-GACCg -3'
miRNA:   3'- -CCCCag---CCGuGG---UGGCUUCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 6892 0.67 0.612242
Target:  5'- cGGGGUUGagaGCACCGCggUGAAGCcgccauuggGGCCg -3'
miRNA:   3'- -CCCCAGC---CGUGGUG--GCUUCGa--------CUGGg -5'
18327 3' -58.8 NC_004681.1 + 7330 0.71 0.38158
Target:  5'- ----cCGGCAC--CCGggGCUGACCCc -3'
miRNA:   3'- ccccaGCCGUGguGGCuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 7879 0.7 0.425111
Target:  5'- gGGGGUUGaGCAguCCuuCGAGGCgGGCCUu -3'
miRNA:   3'- -CCCCAGC-CGU--GGugGCUUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 8379 0.68 0.530255
Target:  5'- cGGcGUCcGCGCCACCGAGGCUcuUCa -3'
miRNA:   3'- cCC-CAGcCGUGGUGGCUUCGAcuGGg -5'
18327 3' -58.8 NC_004681.1 + 8658 0.67 0.581181
Target:  5'- cGGGGgcgaaGGUACCcgucgaACCGAAGggguuCUGGCCg -3'
miRNA:   3'- -CCCCag---CCGUGG------UGGCUUC-----GACUGGg -5'
18327 3' -58.8 NC_004681.1 + 8884 0.71 0.36502
Target:  5'- aGGGcGUUGGCgACCuuGCCGAccuGCUcguaGACCCg -3'
miRNA:   3'- -CCC-CAGCCG-UGG--UGGCUu--CGA----CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 9006 0.68 0.550459
Target:  5'- cGGGGUaccCGCCGCCagccaGGAGCUGgACCUc -3'
miRNA:   3'- -CCCCAgccGUGGUGG-----CUUCGAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 9347 0.66 0.622636
Target:  5'- uGGGGcguccCGGUugucACCACCcc-GCUGAUCCc -3'
miRNA:   3'- -CCCCa----GCCG----UGGUGGcuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 13781 0.67 0.601863
Target:  5'- -aGGaCGGCGCC-CCcAAGCUGucguCCCg -3'
miRNA:   3'- ccCCaGCCGUGGuGGcUUCGACu---GGG- -5'
18327 3' -58.8 NC_004681.1 + 14544 0.75 0.221813
Target:  5'- cGGGGUCGGCAUCGCCGccaccGCcaccacGGCCg -3'
miRNA:   3'- -CCCCAGCCGUGGUGGCuu---CGa-----CUGGg -5'
18327 3' -58.8 NC_004681.1 + 15046 0.72 0.333416
Target:  5'- -aGGUCGGCACCAUgcucgCGcAGaUGACCCa -3'
miRNA:   3'- ccCCAGCCGUGGUG-----GCuUCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 16580 0.67 0.612242
Target:  5'- cGGGGcgCGGCGCCGaguaguCCGugggGGGCUGGaacgCCa -3'
miRNA:   3'- -CCCCa-GCCGUGGU------GGC----UUCGACUg---GG- -5'
18327 3' -58.8 NC_004681.1 + 17512 0.67 0.601863
Target:  5'- --uGUUGGCGCCACCcguGggGC-GGCCg -3'
miRNA:   3'- cccCAGCCGUGGUGG---CuuCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 17641 0.66 0.622636
Target:  5'- aGGG--GGUGCCGCCagGGAGCgUGGCCUg -3'
miRNA:   3'- cCCCagCCGUGGUGG--CUUCG-ACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.