miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 75809 0.66 0.653831
Target:  5'- gGGGGUgguugCGGUcucgaaaucGCCGCCucGGggGACCCu -3'
miRNA:   3'- -CCCCA-----GCCG---------UGGUGGcuUCgaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 68884 0.66 0.633038
Target:  5'- uGGccgCGGCcgacGCCAUCGAGgcGCUGACCa -3'
miRNA:   3'- cCCca-GCCG----UGGUGGCUU--CGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 68435 0.7 0.434167
Target:  5'- -aGGaCGGCACUcuacugaggcuGCCGAagaaGGCUGACCUc -3'
miRNA:   3'- ccCCaGCCGUGG-----------UGGCU----UCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 67879 0.66 0.653831
Target:  5'- cGGGUggaGGCuACgGCCGAGGCUaGGCa- -3'
miRNA:   3'- cCCCAg--CCG-UGgUGGCUUCGA-CUGgg -5'
18327 3' -58.8 NC_004681.1 + 67518 0.71 0.38158
Target:  5'- cGGGUUGGCcuugaGCCACUGGacggccuugGGCUuGCCCu -3'
miRNA:   3'- cCCCAGCCG-----UGGUGGCU---------UCGAcUGGG- -5'
18327 3' -58.8 NC_004681.1 + 65897 0.66 0.633038
Target:  5'- cGGGGU-GGgGCgGCCGAGGCcgaGACg- -3'
miRNA:   3'- -CCCCAgCCgUGgUGGCUUCGa--CUGgg -5'
18327 3' -58.8 NC_004681.1 + 61171 0.66 0.64344
Target:  5'- cGGGGUCGGCGgUcagcguGCCGAcgAGaUGuACCUg -3'
miRNA:   3'- -CCCCAGCCGUgG------UGGCU--UCgAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 61071 0.67 0.581181
Target:  5'- --cGUCGGCacgcugACCGCCGAccccgAGCUGcgguucACCCa -3'
miRNA:   3'- cccCAGCCG------UGGUGGCU-----UCGAC------UGGG- -5'
18327 3' -58.8 NC_004681.1 + 59780 0.73 0.263382
Target:  5'- aGGGGgcguggCGGCGCUGCCauguuGGCUGgaaGCCCa -3'
miRNA:   3'- -CCCCa-----GCCGUGGUGGcu---UCGAC---UGGG- -5'
18327 3' -58.8 NC_004681.1 + 59012 0.68 0.540325
Target:  5'- gGGGGagGGCGcCCACCGcgAAuuUGACCa -3'
miRNA:   3'- -CCCCagCCGU-GGUGGC--UUcgACUGGg -5'
18327 3' -58.8 NC_004681.1 + 57004 1.14 0.000345
Target:  5'- cGGGGUCGGCACCACCGAAGCUGACCCg -3'
miRNA:   3'- -CCCCAGCCGUGGUGGCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 51538 0.66 0.64344
Target:  5'- -aGGUCGacGCGCuCAUCGcccAAGCUGGCCa -3'
miRNA:   3'- ccCCAGC--CGUG-GUGGC---UUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 50320 0.68 0.510327
Target:  5'- --cGagGGCGCCAUUGGAGCUGGCgaCCa -3'
miRNA:   3'- cccCagCCGUGGUGGCUUCGACUG--GG- -5'
18327 3' -58.8 NC_004681.1 + 49343 0.75 0.19565
Target:  5'- -cGG-CGGCGCCGCgGgcGCUGACCa -3'
miRNA:   3'- ccCCaGCCGUGGUGgCuuCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 48799 0.76 0.189304
Target:  5'- cGGGcGacucgaagccgaacUCGGC-CCAUgGGAGCUGGCCCg -3'
miRNA:   3'- -CCC-C--------------AGCCGuGGUGgCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 48117 0.67 0.601863
Target:  5'- -cGGUgGGCAUCGa-GAAGCagaUGGCCCg -3'
miRNA:   3'- ccCCAgCCGUGGUggCUUCG---ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 45250 0.66 0.664206
Target:  5'- aGGGGcaggugcucgUGGCAgCACCGGAcGCcccGCCCg -3'
miRNA:   3'- -CCCCa---------GCCGUgGUGGCUU-CGac-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 43031 0.68 0.514289
Target:  5'- cGGuUCGGCgcagcguucgcagccGCCACCGGAGUgagcaggaUGAUCCa -3'
miRNA:   3'- cCCcAGCCG---------------UGGUGGCUUCG--------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 42275 0.71 0.356928
Target:  5'- cGGaGGUUGGCACCcUCGAAGgaGGCg- -3'
miRNA:   3'- -CC-CCAGCCGUGGuGGCUUCgaCUGgg -5'
18327 3' -58.8 NC_004681.1 + 42212 0.71 0.373238
Target:  5'- -aGGUUGGCAUCGUCaAAGUUGGCCCg -3'
miRNA:   3'- ccCCAGCCGUGGUGGcUUCGACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.