miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 42122 0.66 0.664206
Target:  5'- -aGGUUGGCGCgCACgagguuggcguCGAcaaGGCUGGCCg -3'
miRNA:   3'- ccCCAGCCGUG-GUG-----------GCU---UCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 42052 0.66 0.633038
Target:  5'- -cGGUUaagcaGGCGCCAUUGAGGUUGGCg- -3'
miRNA:   3'- ccCCAG-----CCGUGGUGGCUUCGACUGgg -5'
18327 3' -58.8 NC_004681.1 + 41960 0.67 0.581181
Target:  5'- ----aUGGCGCCugcuuaACCGgcGCUGACCUg -3'
miRNA:   3'- ccccaGCCGUGG------UGGCuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 41943 0.67 0.591507
Target:  5'- -aGGUCGGCuCCG-CGGAGaucGGCCCg -3'
miRNA:   3'- ccCCAGCCGuGGUgGCUUCga-CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 40097 0.66 0.621596
Target:  5'- aGGccaagCGGCGCUgguucaaggccgaGCCGGugAGUUGACCCg -3'
miRNA:   3'- cCCca---GCCGUGG-------------UGGCU--UCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 39121 0.66 0.664206
Target:  5'- uGGGUgGGCgcACCACC--AGCaGGCCg -3'
miRNA:   3'- cCCCAgCCG--UGGUGGcuUCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 39025 0.7 0.425111
Target:  5'- cGGuGGcCGGUugcagGCUGCCauGGAGUUGACCCa -3'
miRNA:   3'- -CC-CCaGCCG-----UGGUGG--CUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 38915 0.66 0.64136
Target:  5'- uGGGUCaauccauGGCcagccugcaaccgGCCACCGugcaucugcGGCUGACCg -3'
miRNA:   3'- cCCCAG-------CCG-------------UGGUGGCu--------UCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 38875 0.66 0.664206
Target:  5'- aGGaGaGcUGGCGCCACUGGAGaaGGCCa -3'
miRNA:   3'- -CC-C-CaGCCGUGGUGGCUUCgaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 37570 0.71 0.36502
Target:  5'- cGGGGUCGaGCuguggugaucgGCCACguaCGAGGCguaccugaaGACCCg -3'
miRNA:   3'- -CCCCAGC-CG-----------UGGUG---GCUUCGa--------CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 37401 0.68 0.540325
Target:  5'- cGGGcaaGC-CCAucCUGGAGCUGACCCg -3'
miRNA:   3'- cCCCagcCGuGGU--GGCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 34829 0.68 0.510327
Target:  5'- aGGGG-CGGCG--GCCGAAGCgcgcggGAauuCCCa -3'
miRNA:   3'- -CCCCaGCCGUggUGGCUUCGa-----CU---GGG- -5'
18327 3' -58.8 NC_004681.1 + 33101 0.74 0.244837
Target:  5'- -aGGUCGGCaggccGCUACCGGgguAGCUGACaCCc -3'
miRNA:   3'- ccCCAGCCG-----UGGUGGCU---UCGACUG-GG- -5'
18327 3' -58.8 NC_004681.1 + 32023 0.75 0.205776
Target:  5'- cGGGuGUCGGCACgGCCGguG-UGAUCCu -3'
miRNA:   3'- -CCC-CAGCCGUGgUGGCuuCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 31833 0.77 0.145154
Target:  5'- cGGGUCGGCGCCugCcacuucggacaGGAGCgcgauggagggcuggUGACCCa -3'
miRNA:   3'- cCCCAGCCGUGGugG-----------CUUCG---------------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 30852 0.67 0.601863
Target:  5'- uGGaGGaCGGCAcgccgcCCGCCGAcccGCUGgaGCCCc -3'
miRNA:   3'- -CC-CCaGCCGU------GGUGGCUu--CGAC--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 30258 0.66 0.633038
Target:  5'- cGGcGGcCGGUacggcgucgagACCACCGAuccguGgUGACCUg -3'
miRNA:   3'- -CC-CCaGCCG-----------UGGUGGCUu----CgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 30152 0.68 0.550459
Target:  5'- cGGGcucaggCGGCGCgGCCGcgGAGUgGACCUa -3'
miRNA:   3'- cCCCa-----GCCGUGgUGGC--UUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 29607 0.72 0.336484
Target:  5'- cGGGUUGGaugcgaacgugacaGCCACCGAGGUgGuCCCg -3'
miRNA:   3'- cCCCAGCCg-------------UGGUGGCUUCGaCuGGG- -5'
18327 3' -58.8 NC_004681.1 + 27708 0.74 0.250895
Target:  5'- --cGcCaGCGCCACCGAGGgUGACCCa -3'
miRNA:   3'- cccCaGcCGUGGUGGCUUCgACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.