miRNA display CGI


Results 41 - 60 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 27340 0.69 0.49072
Target:  5'- -aGGUCa-CACCGCCcccauucGAGCUGACCCu -3'
miRNA:   3'- ccCCAGccGUGGUGGc------UUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 26323 0.71 0.341125
Target:  5'- aGGGGgcgGGCAUCGCCGccguGGCgGGCCa -3'
miRNA:   3'- -CCCCag-CCGUGGUGGCu---UCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 25300 0.69 0.49072
Target:  5'- -cGGUCGccgccguugccaGCGCCGCCaGggGCcUGACCg -3'
miRNA:   3'- ccCCAGC------------CGUGGUGG-CuuCG-ACUGGg -5'
18327 3' -58.8 NC_004681.1 + 25202 0.68 0.540325
Target:  5'- cGGGGUgGGUccgcgGCCaACCGAggugccgaggaGGCUGagcgaggugccGCCCg -3'
miRNA:   3'- -CCCCAgCCG-----UGG-UGGCU-----------UCGAC-----------UGGG- -5'
18327 3' -58.8 NC_004681.1 + 25052 0.66 0.621596
Target:  5'- gGGGGUgaacuggaugaugCGGgGCCGUCGAAGUcGACgCCg -3'
miRNA:   3'- -CCCCA-------------GCCgUGGUGGCUUCGaCUG-GG- -5'
18327 3' -58.8 NC_004681.1 + 24893 0.66 0.664206
Target:  5'- aGGG-CGGCgACC-CCGGcaagugggcAGCUGccACCCu -3'
miRNA:   3'- cCCCaGCCG-UGGuGGCU---------UCGAC--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 24854 0.66 0.64344
Target:  5'- cGGG-CGGCgGCCGCCaAGGCU--CCCu -3'
miRNA:   3'- cCCCaGCCG-UGGUGGcUUCGAcuGGG- -5'
18327 3' -58.8 NC_004681.1 + 24721 0.7 0.43782
Target:  5'- uGGGUCGGCAUCGCagucgacaccggcaaCGggGgaGAUCa -3'
miRNA:   3'- cCCCAGCCGUGGUG---------------GCuuCgaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 24191 0.66 0.622636
Target:  5'- -aGGcUGGCGCCggaACCuu-GCUGGCCCa -3'
miRNA:   3'- ccCCaGCCGUGG---UGGcuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 23655 0.66 0.622636
Target:  5'- cGGGUgaGC-CCAUCG-AGCUGGCCUc -3'
miRNA:   3'- cCCCAgcCGuGGUGGCuUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 23602 0.67 0.611203
Target:  5'- cGGGUUGGUGCCGCUGGuuaucgucuugAGUuccccgucugcgaUGACCUu -3'
miRNA:   3'- cCCCAGCCGUGGUGGCU-----------UCG-------------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 23324 0.67 0.616398
Target:  5'- gGGGGUUGaGCagauugauGCCGCCGAacacgcccuccaggaAGUUGAgcaaCCCu -3'
miRNA:   3'- -CCCCAGC-CG--------UGGUGGCU---------------UCGACU----GGG- -5'
18327 3' -58.8 NC_004681.1 + 22909 0.67 0.591507
Target:  5'- cGGGGUcgcccCGGCGauGCCGuaguAGC-GGCCCa -3'
miRNA:   3'- -CCCCA-----GCCGUggUGGCu---UCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 22859 0.67 0.570894
Target:  5'- uGGGGUCGucaauGCGaCACuCGAGGUUcACCCg -3'
miRNA:   3'- -CCCCAGC-----CGUgGUG-GCUUCGAcUGGG- -5'
18327 3' -58.8 NC_004681.1 + 22800 0.76 0.190753
Target:  5'- uGGGccgcuacuaCGGCAUCGCCGggGC-GACCCc -3'
miRNA:   3'- cCCCa--------GCCGUGGUGGCuuCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 21550 0.69 0.452608
Target:  5'- cGGGGgcguaGGCAUUGCCGggGUUGAg-- -3'
miRNA:   3'- -CCCCag---CCGUGGUGGCuuCGACUggg -5'
18327 3' -58.8 NC_004681.1 + 21361 0.68 0.520254
Target:  5'- gGGGGUCGccagggaGCCACa--GGCUGGCCg -3'
miRNA:   3'- -CCCCAGCcg-----UGGUGgcuUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 20035 0.69 0.49072
Target:  5'- cGGGGa--GCACCugCGuguuGAGCaGGCCCg -3'
miRNA:   3'- -CCCCagcCGUGGugGC----UUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 19224 0.69 0.49072
Target:  5'- gGGGGUCcaGGCGuCCACCc-AGCUGcgaACCUc -3'
miRNA:   3'- -CCCCAG--CCGU-GGUGGcuUCGAC---UGGG- -5'
18327 3' -58.8 NC_004681.1 + 18587 0.71 0.341125
Target:  5'- ---cUCGGCGCCgauACCGAucAGCUGGCCa -3'
miRNA:   3'- ccccAGCCGUGG---UGGCU--UCGACUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.