Results 61 - 80 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18327 | 3' | -58.8 | NC_004681.1 | + | 18451 | 0.73 | 0.283051 |
Target: 5'- ----aUGGCGCCACCGggGgUGaACCCg -3' miRNA: 3'- ccccaGCCGUGGUGGCuuCgAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 18353 | 0.69 | 0.452608 |
Target: 5'- cGGGUucacccccggUGGCGCCAUCGAcauGGCaGGCCa -3' miRNA: 3'- cCCCA----------GCCGUGGUGGCU---UCGaCUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 18057 | 0.68 | 0.500481 |
Target: 5'- uGGGcugCGGgGcCCACCGGAGCc-GCCCu -3' miRNA: 3'- cCCCa--GCCgU-GGUGGCUUCGacUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 17707 | 0.67 | 0.570894 |
Target: 5'- cGGGGUCGuccGCgcccgaGCCGCCGAuaccacGGCgcuUGGCCg -3' miRNA: 3'- -CCCCAGC---CG------UGGUGGCU------UCG---ACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 17641 | 0.66 | 0.622636 |
Target: 5'- aGGG--GGUGCCGCCagGGAGCgUGGCCUg -3' miRNA: 3'- cCCCagCCGUGGUGG--CUUCG-ACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 17512 | 0.67 | 0.601863 |
Target: 5'- --uGUUGGCGCCACCcguGggGC-GGCCg -3' miRNA: 3'- cccCAGCCGUGGUGG---CuuCGaCUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 16580 | 0.67 | 0.612242 |
Target: 5'- cGGGGcgCGGCGCCGaguaguCCGugggGGGCUGGaacgCCa -3' miRNA: 3'- -CCCCa-GCCGUGGU------GGC----UUCGACUg---GG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 15046 | 0.72 | 0.333416 |
Target: 5'- -aGGUCGGCACCAUgcucgCGcAGaUGACCCa -3' miRNA: 3'- ccCCAGCCGUGGUG-----GCuUCgACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 14544 | 0.75 | 0.221813 |
Target: 5'- cGGGGUCGGCAUCGCCGccaccGCcaccacGGCCg -3' miRNA: 3'- -CCCCAGCCGUGGUGGCuu---CGa-----CUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 13781 | 0.67 | 0.601863 |
Target: 5'- -aGGaCGGCGCC-CCcAAGCUGucguCCCg -3' miRNA: 3'- ccCCaGCCGUGGuGGcUUCGACu---GGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 9347 | 0.66 | 0.622636 |
Target: 5'- uGGGGcguccCGGUugucACCACCcc-GCUGAUCCc -3' miRNA: 3'- -CCCCa----GCCG----UGGUGGcuuCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 9006 | 0.68 | 0.550459 |
Target: 5'- cGGGGUaccCGCCGCCagccaGGAGCUGgACCUc -3' miRNA: 3'- -CCCCAgccGUGGUGG-----CUUCGAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 8884 | 0.71 | 0.36502 |
Target: 5'- aGGGcGUUGGCgACCuuGCCGAccuGCUcguaGACCCg -3' miRNA: 3'- -CCC-CAGCCG-UGG--UGGCUu--CGA----CUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 8658 | 0.67 | 0.581181 |
Target: 5'- cGGGGgcgaaGGUACCcgucgaACCGAAGggguuCUGGCCg -3' miRNA: 3'- -CCCCag---CCGUGG------UGGCUUC-----GACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 8379 | 0.68 | 0.530255 |
Target: 5'- cGGcGUCcGCGCCACCGAGGCUcuUCa -3' miRNA: 3'- cCC-CAGcCGUGGUGGCUUCGAcuGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 7879 | 0.7 | 0.425111 |
Target: 5'- gGGGGUUGaGCAguCCuuCGAGGCgGGCCUu -3' miRNA: 3'- -CCCCAGC-CGU--GGugGCUUCGaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 7330 | 0.71 | 0.38158 |
Target: 5'- ----cCGGCAC--CCGggGCUGACCCc -3' miRNA: 3'- ccccaGCCGUGguGGCuuCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 6892 | 0.67 | 0.612242 |
Target: 5'- cGGGGUUGagaGCACCGCggUGAAGCcgccauuggGGCCg -3' miRNA: 3'- -CCCCAGC---CGUGGUG--GCUUCGa--------CUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 6394 | 0.69 | 0.471469 |
Target: 5'- aGGGGgaggaGGCcCCggcGCCGAAGC-GACCg -3' miRNA: 3'- -CCCCag---CCGuGG---UGGCUUCGaCUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 6356 | 0.8 | 0.093926 |
Target: 5'- cGGGGU-GGCGaCACCGGAGUUGACCa -3' miRNA: 3'- -CCCCAgCCGUgGUGGCUUCGACUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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