miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 48117 0.67 0.601863
Target:  5'- -cGGUgGGCAUCGa-GAAGCagaUGGCCCg -3'
miRNA:   3'- ccCCAgCCGUGGUggCUUCG---ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 6394 0.69 0.471469
Target:  5'- aGGGGgaggaGGCcCCggcGCCGAAGC-GACCg -3'
miRNA:   3'- -CCCCag---CCGuGG---UGGCUUCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 27340 0.69 0.49072
Target:  5'- -aGGUCa-CACCGCCcccauucGAGCUGACCCu -3'
miRNA:   3'- ccCCAGccGUGGUGGc------UUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 59012 0.68 0.540325
Target:  5'- gGGGGagGGCGcCCACCGcgAAuuUGACCa -3'
miRNA:   3'- -CCCCagCCGU-GGUGGC--UUcgACUGGg -5'
18327 3' -58.8 NC_004681.1 + 30152 0.68 0.550459
Target:  5'- cGGGcucaggCGGCGCgGCCGcgGAGUgGACCUa -3'
miRNA:   3'- cCCCa-----GCCGUGgUGGC--UUCGaCUGGG- -5'
18327 3' -58.8 NC_004681.1 + 61071 0.67 0.581181
Target:  5'- --cGUCGGCacgcugACCGCCGAccccgAGCUGcgguucACCCa -3'
miRNA:   3'- cccCAGCCG------UGGUGGCU-----UCGAC------UGGG- -5'
18327 3' -58.8 NC_004681.1 + 41960 0.67 0.581181
Target:  5'- ----aUGGCGCCugcuuaACCGgcGCUGACCUg -3'
miRNA:   3'- ccccaGCCGUGG------UGGCuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 30852 0.67 0.601863
Target:  5'- uGGaGGaCGGCAcgccgcCCGCCGAcccGCUGgaGCCCc -3'
miRNA:   3'- -CC-CCaGCCGU------GGUGGCUu--CGAC--UGGG- -5'
18327 3' -58.8 NC_004681.1 + 13781 0.67 0.601863
Target:  5'- -aGGaCGGCGCC-CCcAAGCUGucguCCCg -3'
miRNA:   3'- ccCCaGCCGUGGuGGcUUCGACu---GGG- -5'
18327 3' -58.8 NC_004681.1 + 18353 0.69 0.452608
Target:  5'- cGGGUucacccccggUGGCGCCAUCGAcauGGCaGGCCa -3'
miRNA:   3'- cCCCA----------GCCGUGGUGGCU---UCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 2927 0.69 0.451676
Target:  5'- uGGGcGaCGGCACCgccacgcgcGCCGAguucaccAGCgagGACCCc -3'
miRNA:   3'- -CCC-CaGCCGUGG---------UGGCU-------UCGa--CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 24721 0.7 0.43782
Target:  5'- uGGGUCGGCAUCGCagucgacaccggcaaCGggGgaGAUCa -3'
miRNA:   3'- cCCCAGCCGUGGUG---------------GCuuCgaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 49343 0.75 0.19565
Target:  5'- -cGG-CGGCGCCGCgGgcGCUGACCa -3'
miRNA:   3'- ccCCaGCCGUGGUGgCuuCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 32023 0.75 0.205776
Target:  5'- cGGGuGUCGGCACgGCCGguG-UGAUCCu -3'
miRNA:   3'- -CCC-CAGCCGUGgUGGCuuCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 14544 0.75 0.221813
Target:  5'- cGGGGUCGGCAUCGCCGccaccGCcaccacGGCCg -3'
miRNA:   3'- -CCCCAGCCGUGGUGGCuu---CGa-----CUGGg -5'
18327 3' -58.8 NC_004681.1 + 475 0.73 0.255209
Target:  5'- uGGGGa-GGCGCCugGCCGAgaugcugggcgucaAGCUGgACCCg -3'
miRNA:   3'- -CCCCagCCGUGG--UGGCU--------------UCGAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 15046 0.72 0.333416
Target:  5'- -aGGUCGGCACCAUgcucgCGcAGaUGACCCa -3'
miRNA:   3'- ccCCAGCCGUGGUG-----GCuUCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 37570 0.71 0.36502
Target:  5'- cGGGGUCGaGCuguggugaucgGCCACguaCGAGGCguaccugaaGACCCg -3'
miRNA:   3'- -CCCCAGC-CG-----------UGGUG---GCUUCGa--------CUGGG- -5'
18327 3' -58.8 NC_004681.1 + 7330 0.71 0.38158
Target:  5'- ----cCGGCAC--CCGggGCUGACCCc -3'
miRNA:   3'- ccccaGCCGUGguGGCuuCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 68435 0.7 0.434167
Target:  5'- -aGGaCGGCACUcuacugaggcuGCCGAagaaGGCUGACCUc -3'
miRNA:   3'- ccCCaGCCGUGG-----------UGGCU----UCGACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.