miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 3' -58.8 NC_004681.1 + 50320 0.68 0.510327
Target:  5'- --cGagGGCGCCAUUGGAGCUGGCgaCCa -3'
miRNA:   3'- cccCagCCGUGGUGGCUUCGACUG--GG- -5'
18327 3' -58.8 NC_004681.1 + 43031 0.68 0.514289
Target:  5'- cGGuUCGGCgcagcguucgcagccGCCACCGGAGUgagcaggaUGAUCCa -3'
miRNA:   3'- cCCcAGCCG---------------UGGUGGCUUCG--------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 21361 0.68 0.520254
Target:  5'- gGGGGUCGccagggaGCCACa--GGCUGGCCg -3'
miRNA:   3'- -CCCCAGCcg-----UGGUGgcuUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 8379 0.68 0.530255
Target:  5'- cGGcGUCcGCGCCACCGAGGCUcuUCa -3'
miRNA:   3'- cCC-CAGcCGUGGUGGCUUCGAcuGGg -5'
18327 3' -58.8 NC_004681.1 + 37401 0.68 0.540325
Target:  5'- cGGGcaaGC-CCAucCUGGAGCUGACCCg -3'
miRNA:   3'- cCCCagcCGuGGU--GGCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 39025 0.7 0.425111
Target:  5'- cGGuGGcCGGUugcagGCUGCCauGGAGUUGACCCa -3'
miRNA:   3'- -CC-CCaGCCG-----UGGUGG--CUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 67518 0.71 0.38158
Target:  5'- cGGGUUGGCcuugaGCCACUGGacggccuugGGCUuGCCCu -3'
miRNA:   3'- cCCCAGCCG-----UGGUGGCU---------UCGAcUGGG- -5'
18327 3' -58.8 NC_004681.1 + 42212 0.71 0.373238
Target:  5'- -aGGUUGGCAUCGUCaAAGUUGGCCCg -3'
miRNA:   3'- ccCCAGCCGUGGUGGcUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 6356 0.8 0.093926
Target:  5'- cGGGGU-GGCGaCACCGGAGUUGACCa -3'
miRNA:   3'- -CCCCAgCCGUgGUGGCUUCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 31833 0.77 0.145154
Target:  5'- cGGGUCGGCGCCugCcacuucggacaGGAGCgcgauggagggcuggUGACCCa -3'
miRNA:   3'- cCCCAGCCGUGGugG-----------CUUCG---------------ACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 48799 0.76 0.189304
Target:  5'- cGGGcGacucgaagccgaacUCGGC-CCAUgGGAGCUGGCCCg -3'
miRNA:   3'- -CCC-C--------------AGCCGuGGUGgCUUCGACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 33101 0.74 0.244837
Target:  5'- -aGGUCGGCaggccGCUACCGGgguAGCUGACaCCc -3'
miRNA:   3'- ccCCAGCCG-----UGGUGGCU---UCGACUG-GG- -5'
18327 3' -58.8 NC_004681.1 + 27708 0.74 0.250895
Target:  5'- --cGcCaGCGCCACCGAGGgUGACCCa -3'
miRNA:   3'- cccCaGcCGUGGUGGCUUCgACUGGG- -5'
18327 3' -58.8 NC_004681.1 + 59780 0.73 0.263382
Target:  5'- aGGGGgcguggCGGCGCUGCCauguuGGCUGgaaGCCCa -3'
miRNA:   3'- -CCCCa-----GCCGUGGUGGcu---UCGAC---UGGG- -5'
18327 3' -58.8 NC_004681.1 + 18451 0.73 0.283051
Target:  5'- ----aUGGCGCCACCGggGgUGaACCCg -3'
miRNA:   3'- ccccaGCCGUGGUGGCuuCgAC-UGGG- -5'
18327 3' -58.8 NC_004681.1 + 29607 0.72 0.336484
Target:  5'- cGGGUUGGaugcgaacgugacaGCCACCGAGGUgGuCCCg -3'
miRNA:   3'- cCCCAGCCg-------------UGGUGGCUUCGaCuGGG- -5'
18327 3' -58.8 NC_004681.1 + 26323 0.71 0.341125
Target:  5'- aGGGGgcgGGCAUCGCCGccguGGCgGGCCa -3'
miRNA:   3'- -CCCCag-CCGUGGUGGCu---UCGaCUGGg -5'
18327 3' -58.8 NC_004681.1 + 18587 0.71 0.341125
Target:  5'- ---cUCGGCGCCgauACCGAucAGCUGGCCa -3'
miRNA:   3'- ccccAGCCGUGG---UGGCU--UCGACUGGg -5'
18327 3' -58.8 NC_004681.1 + 42275 0.71 0.356928
Target:  5'- cGGaGGUUGGCACCcUCGAAGgaGGCg- -3'
miRNA:   3'- -CC-CCAGCCGUGGuGGCUUCgaCUGgg -5'
18327 3' -58.8 NC_004681.1 + 8884 0.71 0.36502
Target:  5'- aGGGcGUUGGCgACCuuGCCGAccuGCUcguaGACCCg -3'
miRNA:   3'- -CCC-CAGCCG-UGG--UGGCUu--CGA----CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.