Results 61 - 80 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18327 | 3' | -58.8 | NC_004681.1 | + | 29607 | 0.72 | 0.336484 |
Target: 5'- cGGGUUGGaugcgaacgugacaGCCACCGAGGUgGuCCCg -3' miRNA: 3'- cCCCAGCCg-------------UGGUGGCUUCGaCuGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 18451 | 0.73 | 0.283051 |
Target: 5'- ----aUGGCGCCACCGggGgUGaACCCg -3' miRNA: 3'- ccccaGCCGUGGUGGCuuCgAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 59780 | 0.73 | 0.263382 |
Target: 5'- aGGGGgcguggCGGCGCUGCCauguuGGCUGgaaGCCCa -3' miRNA: 3'- -CCCCa-----GCCGUGGUGGcu---UCGAC---UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 27708 | 0.74 | 0.250895 |
Target: 5'- --cGcCaGCGCCACCGAGGgUGACCCa -3' miRNA: 3'- cccCaGcCGUGGUGGCUUCgACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 33101 | 0.74 | 0.244837 |
Target: 5'- -aGGUCGGCaggccGCUACCGGgguAGCUGACaCCc -3' miRNA: 3'- ccCCAGCCG-----UGGUGGCU---UCGACUG-GG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 48799 | 0.76 | 0.189304 |
Target: 5'- cGGGcGacucgaagccgaacUCGGC-CCAUgGGAGCUGGCCCg -3' miRNA: 3'- -CCC-C--------------AGCCGuGGUGgCUUCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 31833 | 0.77 | 0.145154 |
Target: 5'- cGGGUCGGCGCCugCcacuucggacaGGAGCgcgauggagggcuggUGACCCa -3' miRNA: 3'- cCCCAGCCGUGGugG-----------CUUCG---------------ACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 6356 | 0.8 | 0.093926 |
Target: 5'- cGGGGU-GGCGaCACCGGAGUUGACCa -3' miRNA: 3'- -CCCCAgCCGUgGUGGCUUCGACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 42275 | 0.71 | 0.356928 |
Target: 5'- cGGaGGUUGGCACCcUCGAAGgaGGCg- -3' miRNA: 3'- -CC-CCAGCCGUGGuGGCUUCgaCUGgg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 8884 | 0.71 | 0.36502 |
Target: 5'- aGGGcGUUGGCgACCuuGCCGAccuGCUcguaGACCCg -3' miRNA: 3'- -CCC-CAGCCG-UGG--UGGCUu--CGA----CUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 18057 | 0.68 | 0.500481 |
Target: 5'- uGGGcugCGGgGcCCACCGGAGCc-GCCCu -3' miRNA: 3'- cCCCa--GCCgU-GGUGGCUUCGacUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 19224 | 0.69 | 0.49072 |
Target: 5'- gGGGGUCcaGGCGuCCACCc-AGCUGcgaACCUc -3' miRNA: 3'- -CCCCAG--CCGU-GGUGGcuUCGAC---UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 25300 | 0.69 | 0.49072 |
Target: 5'- -cGGUCGccgccguugccaGCGCCGCCaGggGCcUGACCg -3' miRNA: 3'- ccCCAGC------------CGUGGUGG-CuuCG-ACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 20035 | 0.69 | 0.49072 |
Target: 5'- cGGGGa--GCACCugCGuguuGAGCaGGCCCg -3' miRNA: 3'- -CCCCagcCGUGGugGC----UUCGaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 21550 | 0.69 | 0.452608 |
Target: 5'- cGGGGgcguaGGCAUUGCCGggGUUGAg-- -3' miRNA: 3'- -CCCCag---CCGUGGUGGCuuCGACUggg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 658 | 0.69 | 0.452608 |
Target: 5'- uGGGGaugCGGCcguCACUGGAGCUuguGCCCg -3' miRNA: 3'- -CCCCa--GCCGug-GUGGCUUCGAc--UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 7879 | 0.7 | 0.425111 |
Target: 5'- gGGGGUUGaGCAguCCuuCGAGGCgGGCCUu -3' miRNA: 3'- -CCCCAGC-CGU--GGugGCUUCGaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 39025 | 0.7 | 0.425111 |
Target: 5'- cGGuGGcCGGUugcagGCUGCCauGGAGUUGACCCa -3' miRNA: 3'- -CC-CCaGCCG-----UGGUGG--CUUCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 67518 | 0.71 | 0.38158 |
Target: 5'- cGGGUUGGCcuugaGCCACUGGacggccuugGGCUuGCCCu -3' miRNA: 3'- cCCCAGCCG-----UGGUGGCU---------UCGAcUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 42212 | 0.71 | 0.373238 |
Target: 5'- -aGGUUGGCAUCGUCaAAGUUGGCCCg -3' miRNA: 3'- ccCCAGCCGUGGUGGcUUCGACUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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