Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18327 | 3' | -58.8 | NC_004681.1 | + | 22859 | 0.67 | 0.570894 |
Target: 5'- uGGGGUCGucaauGCGaCACuCGAGGUUcACCCg -3' miRNA: 3'- -CCCCAGC-----CGUgGUG-GCUUCGAcUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 42052 | 0.66 | 0.633038 |
Target: 5'- -cGGUUaagcaGGCGCCAUUGAGGUUGGCg- -3' miRNA: 3'- ccCCAG-----CCGUGGUGGCUUCGACUGgg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 9006 | 0.68 | 0.550459 |
Target: 5'- cGGGGUaccCGCCGCCagccaGGAGCUGgACCUc -3' miRNA: 3'- -CCCCAgccGUGGUGG-----CUUCGAC-UGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 22909 | 0.67 | 0.591507 |
Target: 5'- cGGGGUcgcccCGGCGauGCCGuaguAGC-GGCCCa -3' miRNA: 3'- -CCCCA-----GCCGUggUGGCu---UCGaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 23602 | 0.67 | 0.611203 |
Target: 5'- cGGGUUGGUGCCGCUGGuuaucgucuugAGUuccccgucugcgaUGACCUu -3' miRNA: 3'- cCCCAGCCGUGGUGGCU-----------UCG-------------ACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 67879 | 0.66 | 0.653831 |
Target: 5'- cGGGUggaGGCuACgGCCGAGGCUaGGCa- -3' miRNA: 3'- cCCCAg--CCG-UGgUGGCUUCGA-CUGgg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 65897 | 0.66 | 0.633038 |
Target: 5'- cGGGGU-GGgGCgGCCGAGGCcgaGACg- -3' miRNA: 3'- -CCCCAgCCgUGgUGGCUUCGa--CUGgg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 24191 | 0.66 | 0.622636 |
Target: 5'- -aGGcUGGCGCCggaACCuu-GCUGGCCCa -3' miRNA: 3'- ccCCaGCCGUGG---UGGcuuCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 25052 | 0.66 | 0.621596 |
Target: 5'- gGGGGUgaacuggaugaugCGGgGCCGUCGAAGUcGACgCCg -3' miRNA: 3'- -CCCCA-------------GCCgUGGUGGCUUCGaCUG-GG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 40097 | 0.66 | 0.621596 |
Target: 5'- aGGccaagCGGCGCUgguucaaggccgaGCCGGugAGUUGACCCg -3' miRNA: 3'- cCCca---GCCGUGG-------------UGGCU--UCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 6892 | 0.67 | 0.612242 |
Target: 5'- cGGGGUUGagaGCACCGCggUGAAGCcgccauuggGGCCg -3' miRNA: 3'- -CCCCAGC---CGUGGUG--GCUUCGa--------CUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 42122 | 0.66 | 0.664206 |
Target: 5'- -aGGUUGGCGCgCACgagguuggcguCGAcaaGGCUGGCCg -3' miRNA: 3'- ccCCAGCCGUG-GUG-----------GCU---UCGACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 24854 | 0.66 | 0.64344 |
Target: 5'- cGGG-CGGCgGCCGCCaAGGCU--CCCu -3' miRNA: 3'- cCCCaGCCG-UGGUGGcUUCGAcuGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 75809 | 0.66 | 0.653831 |
Target: 5'- gGGGGUgguugCGGUcucgaaaucGCCGCCucGGggGACCCu -3' miRNA: 3'- -CCCCA-----GCCG---------UGGUGGcuUCgaCUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 51538 | 0.66 | 0.64344 |
Target: 5'- -aGGUCGacGCGCuCAUCGcccAAGCUGGCCa -3' miRNA: 3'- ccCCAGC--CGUG-GUGGC---UUCGACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 38915 | 0.66 | 0.64136 |
Target: 5'- uGGGUCaauccauGGCcagccugcaaccgGCCACCGugcaucugcGGCUGACCg -3' miRNA: 3'- cCCCAG-------CCG-------------UGGUGGCu--------UCGACUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 37570 | 0.71 | 0.36502 |
Target: 5'- cGGGGUCGaGCuguggugaucgGCCACguaCGAGGCguaccugaaGACCCg -3' miRNA: 3'- -CCCCAGC-CG-----------UGGUG---GCUUCGa--------CUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 38875 | 0.66 | 0.664206 |
Target: 5'- aGGaGaGcUGGCGCCACUGGAGaaGGCCa -3' miRNA: 3'- -CC-C-CaGCCGUGGUGGCUUCgaCUGGg -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 27340 | 0.69 | 0.49072 |
Target: 5'- -aGGUCa-CACCGCCcccauucGAGCUGACCCu -3' miRNA: 3'- ccCCAGccGUGGUGGc------UUCGACUGGG- -5' |
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18327 | 3' | -58.8 | NC_004681.1 | + | 59012 | 0.68 | 0.540325 |
Target: 5'- gGGGGagGGCGcCCACCGcgAAuuUGACCa -3' miRNA: 3'- -CCCCagCCGU-GGUGGC--UUcgACUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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